Factsheet for VIT_04s0023g03340.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007270_P001	Maize	mitochondrion	79.07	95.77
EES08264	Sorghum	mitochondrion	79.07	95.77
PGSC0003DMT400025529	Potato	mitochondrion	79.07	95.77
Solyc04g081410.2.1	Tomato	plastid	79.07	95.77
EES16862	Sorghum	cytosol	78.49	95.07
Os12t0207300-01	Rice	plasma membrane	78.49	95.07
TraesCS5D01G119700.1	Wheat	mitochondrion	77.91	94.37
TraesCS5B01G113000.1	Wheat	cytosol	77.91	94.37
HORVU5Hr1G033310.1	Barley	mitochondrion	77.91	94.37
CDY63352	Canola	cytosol, mitochondrion	78.49	93.1
AT1G47830.1	Thale cress	mitochondrion	76.74	92.96
CDY70589	Canola	cytosol	63.95	91.67
TraesCS5A01G112300.2	Wheat	mitochondrion	75.0	90.21
Bra027439.1-P	Field mustard	cytosol	79.65	88.96
CDY52072	Canola	cytosol	79.65	88.96
Bra015600.1-P	Field mustard	cytosol, mitochondrion	77.91	85.35
CDY06725	Canola	cytosol	77.91	85.35
GSMUA_Achr8P19280_001	Banana	cytosol	79.65	81.07
CDX71554	Canola	cytosol	55.81	80.0
Zm00001d041778_P006	Maize	cytosol, mitochondrion	71.51	78.85
VIT_18s0001g14240.t01	Wine grape	cytosol	80.81	73.94
VIT_11s0016g02840.t01	Wine grape	cytosol, mitochondrion	34.3	43.38
VIT_16s0050g00660.t01	Wine grape	golgi	43.02	41.81
VIT_01s0127g00810.t01	Wine grape	golgi	43.02	41.57
VIT_04s0023g01770.t01	Wine grape	cytosol, mitochondrion	32.56	33.94

Protein Annotations

EntrezGene:100260819	wikigene:100260819	MapMan:22.1.3.4	Gene3D:3.30.450.60	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su
ProteinID:CBI17380	ProteinID:CBI17380.3	UniProt:D7SP01	EMBL:FN594959	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0008565	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	EntrezGene:LOC100260819	wikigene:LOC100260819
InterPro:Longin-like_dom_sf	PFAM:PF01217	PIRSF:PIRSF015588	PANTHER:PTHR11753	PANTHER:PTHR11753:SF17	SUPFAM:SSF64356
UniParc:UPI00015CB449	ArrayExpress:VIT_04s0023g03340	EnsemblPlantsGene:VIT_04s0023g03340	EnsemblPlants:VIT_04s0023g03340.t01	RefSeq:XP_002268045	RefSeq:XP_002268045.1
SEG:seg	:	:	:	:	:

Description

AP complex subunit sigma [Source:UniProtKB/TrEMBL;Acc:D7SP01]

Coordinates

chr4:+:19853974..19859159

Molecular Weight (calculated)

20607.9 Da

IEP (calculated)

7.010

GRAVY (calculated)

-0.436

Length

172 amino acids

Sequence
(BLAST)

001: MGRVETKPIP MLAHHCESQK KKEKERSQEQ SIRFILLQNR QGKTRLAKYY VPFEESEKHK VEYEVHRLVV NRDPKHTNFV EFRTHKVIYR RYAGLFFSLC
101: VDITDNELAY LECIHLFVEI LDHFFSNVCE LDLVFNFHKV YLILDEFILA GELQETSKKA IIERMGELEK QE

Best Arabidopsis Sequence Match ( AT1G47830.1 )
(BLAST)

001: MIRFILLQNR QGKTRLAKYY VPLEESEKHK VEYEVHRLVV NRDAKFTNFV EFRTHKVIYR RYAGLFFSVC VDITDNELAY LESIHLFVEI LDHFFSNVCE
101: LDLVFNFHKV YLILDEFILA GELQETSKRA IIERMSELEK LQ

Arabidopsis Description

AP17AP-2 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:Q84WL9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.