CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3
plasma membrane 2
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	golgi, plasma membrane
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027439.1-P	Field mustard	cytosol	100.0	100.0
CDY63352	Canola	cytosol, mitochondrion	92.21	97.93
EES16862	Sorghum	cytosol	88.96	96.48
Os12t0207300-01	Rice	plasma membrane	88.96	96.48
PGSC0003DMT400025529	Potato	mitochondrion	88.31	95.77
EES08264	Sorghum	mitochondrion	88.31	95.77
Solyc04g081410.2.1	Tomato	plastid	88.31	95.77
Zm00001d007270_P001	Maize	mitochondrion	88.31	95.77
TraesCS5B01G113000.1	Wheat	cytosol	87.66	95.07
KRH05944	Soybean	mitochondrion	87.66	95.07
CDY70589	Canola	cytosol	74.03	95.0
KRH17427	Soybean	mitochondrion	87.01	94.37
TraesCS5D01G119700.1	Wheat	mitochondrion	87.01	94.37
HORVU5Hr1G033310.1	Barley	mitochondrion	87.01	94.37
TraesCS5A01G112300.2	Wheat	mitochondrion	83.12	89.51
CDY06725	Canola	cytosol	90.91	89.17
CDX71554	Canola	cytosol	63.64	81.67
GSMUA_Achr8P19280_001	Banana	cytosol	88.31	80.47
Zm00001d041778_P006	Maize	cytosol, mitochondrion	81.17	80.13
VIT_04s0023g03340.t01	Wine grape	cytosol	88.96	79.65
VIT_18s0001g14240.t01	Wine grape	cytosol	89.61	73.4
CDY35888	Canola	mitochondrion	41.56	44.44
CDX82722	Canola	mitochondrion	41.56	44.44
CDY48729	Canola	mitochondrion	40.91	44.06
CDY03335	Canola	mitochondrion	40.91	44.06
CDY69066	Canola	cytosol	48.05	41.81
CDX69137	Canola	extracellular	46.75	38.92
CDX75500	Canola	cytosol	47.4	35.96
CDY50208	Canola	extracellular, plasma membrane	48.7	34.88
CDX90681	Canola	cytosol	36.36	33.53
CDY28984	Canola	cytosol	37.66	27.49
CDX73778	Canola	cytosol, endoplasmic reticulum, nucleus	20.78	22.54

Protein Annotations

MapMan:22.1.3.4	Gene3D:3.30.450.60	GO:A0A078IQA4	UniProt:A0A078IQA4	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su
EnsemblPlants:CDY52072	ProteinID:CDY52072	ProteinID:CDY52072.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565
GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	EnsemblPlantsGene:GSBRNA2T00004803001	InterPro:Longin-like_dom_sf	PFAM:PF01217
PIRSF:PIRSF015588	PANTHER:PTHR11753	PANTHER:PTHR11753:SF17	SUPFAM:SSF64356	UniParc:UPI000254216F	:

Description

BnaA09g53440DBnaA09g53440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IQA4]

Coordinates

chrLK033053:-:45591..47280

Molecular Weight (calculated)

18507.4 Da

IEP (calculated)

5.943

GRAVY (calculated)

-0.063

Length

154 amino acids

Sequence
(BLAST)

001: MSEISFWSNL SLQIRFILLQ NRQGKTRLAK YYVPLEESEK HKVEYEVHRL VVNRDSKFTN FVEFRTHKVI YRRYAGLFFS LCVDITDNEL AYLECIHLFV
101: EILDHFFSNV CELDLVFNFH KVYLILDEFI LAGELQETSK RAIIERMSEL EKLE

Best Arabidopsis Sequence Match ( AT1G47830.1 )
(BLAST)

001: MIRFILLQNR QGKTRLAKYY VPLEESEKHK VEYEVHRLVV NRDAKFTNFV EFRTHKVIYR RYAGLFFSVC VDITDNELAY LESIHLFVEI LDHFFSNVCE
101: LDLVFNFHKV YLILDEFILA GELQETSKRA IIERMSELEK LQ

Arabidopsis Description

AP17AP-2 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:Q84WL9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.