CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70589	Canola	cytosol	75.83	75.83
Solyc04g081410.2.1	Tomato	plastid	80.0	67.61
PGSC0003DMT400025529	Potato	mitochondrion	80.0	67.61
Os12t0207300-01	Rice	plasma membrane	80.0	67.61
EES16862	Sorghum	cytosol	80.0	67.61
CDY63352	Canola	cytosol, mitochondrion	81.67	67.59
Zm00001d007270_P001	Maize	mitochondrion	79.17	66.9
EES08264	Sorghum	mitochondrion	79.17	66.9
TraesCS5D01G119700.1	Wheat	mitochondrion	78.33	66.2
TraesCS5B01G113000.1	Wheat	cytosol	78.33	66.2
KRH05944	Soybean	mitochondrion	78.33	66.2
HORVU5Hr1G033310.1	Barley	mitochondrion	78.33	66.2
KRH17427	Soybean	mitochondrion	77.5	65.49
TraesCS5A01G112300.2	Wheat	mitochondrion	77.5	65.03
CDY52072	Canola	cytosol	81.67	63.64
Zm00001d041778_P006	Maize	cytosol, mitochondrion	80.0	61.54
CDY06725	Canola	cytosol	80.0	61.15
VIT_04s0023g03340.t01	Wine grape	cytosol	80.0	55.81
GSMUA_Achr8P19280_001	Banana	cytosol	78.33	55.62
VIT_18s0001g14240.t01	Wine grape	cytosol	79.17	50.53
CDY48729	Canola	mitochondrion	40.83	34.27
CDY03335	Canola	mitochondrion	40.83	34.27
CDY35888	Canola	mitochondrion	40.83	34.03
CDX82722	Canola	mitochondrion	40.83	34.03
CDY69066	Canola	cytosol	48.33	32.77
CDX69137	Canola	extracellular	47.5	30.81
CDX75500	Canola	cytosol	48.33	28.57
CDY50208	Canola	extracellular, plasma membrane	48.33	26.98
CDX90681	Canola	cytosol	36.67	26.35
CDY28984	Canola	cytosol	36.67	20.85
CDX73778	Canola	cytosol, endoplasmic reticulum, nucleus	22.5	19.01

Protein Annotations

EnsemblPlants:CDX71554	EnsemblPlantsGene:GSBRNA2T00148538001	Gene3D:3.30.450.60	GO:A0A078C608	GO:GO:0006810	GO:GO:0008150
GO:GO:0015031	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su	InterPro:Longin-like_dom_sf	PANTHER:PTHR11753	PANTHER:PTHR11753:SF17
PFAM:PF01217	PIRSF:PIRSF015588	ProteinID:CDX71554	ProteinID:CDX71554.1	SUPFAM:SSF64356	UniParc:UPI0004EE180D
MapMan:35.1	:	:	:	:	:

Description

BnaC04g17890D

Coordinates

chrLK031793:-:2750630..2752225

Molecular Weight (calculated)

14272.5 Da

IEP (calculated)

8.322

GRAVY (calculated)

0.186

Length

120 amino acids

Sequence
(BLAST)

001: MPIPSFGKRR KAVEAKHWMR VLVSFRLVVN RDSKFTNFVE FRTHKVIYRR YAGLFFSLCV DITDNELAYL ECIYLFVEIL DNFFSNVCEL NLVFNFHKVY
101: LILDEFILAG ELQETSKRCA

Best Arabidopsis Sequence Match ( AT1G47830.1 )
(BLAST)

001: MIRFILLQNR QGKTRLAKYY VPLEESEKHK VEYEVHRLVV NRDAKFTNFV EFRTHKVIYR RYAGLFFSVC VDITDNELAY LESIHLFVEI LDHFFSNVCE
101: LDLVFNFHKV YLILDEFILA GELQETSKRA IIERMSELEK LQ

Arabidopsis Description

AP17AP-2 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:Q84WL9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.