CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

plastid 2
cytosol 1
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY46183
CDY63680
CDY63681

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17380.1	CDY46183	AT1G60780.1	23543752
AT2G17380.1	CDY63680	AT1G60780.1	23543752
AT2G17380.1	CDY63681	AT1G60780.1	23543752

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002054.1-P	Field mustard	cytosol, mitochondrion	74.42	99.38
AT2G17380.1	Thale cress	cytosol, mitochondrion	73.95	98.76
CDY69066	Canola	cytosol	74.88	90.96
Os03t0783700-00	Rice	plasma membrane	66.51	88.82
TraesCS5D01G430000.1	Wheat	cytosol, mitochondrion	66.05	88.2
TraesCS5B01G423600.1	Wheat	cytosol, mitochondrion	66.05	88.2
KRH17634	Soybean	endoplasmic reticulum	65.58	87.58
KRG90038	Soybean	cytosol, mitochondrion	65.58	87.58
CDX69137	Canola	extracellular	71.16	82.7
HORVU5Hr1G102770.1	Barley	extracellular, golgi	67.91	81.11
HORVU5Hr1G102930.4	Barley	extracellular, golgi	67.91	81.11
CDX75500	Canola	cytosol	72.09	76.35
Zm00001d013128_P004	Maize	cytosol, plastid	65.12	74.07
GSMUA_Achr3P24130_001	Banana	cytosol, mitochondrion	68.37	70.0
GSMUA_Achr8P15550_001	Banana	cytosol, mitochondrion	62.33	68.37
KXG37427	Sorghum	cytosol, nucleus, plastid	70.23	56.34
GSMUA_Achr9P11170_001	Banana	extracellular	64.65	51.1
CDY63352	Canola	cytosol, mitochondrion	34.42	51.03
CDY70589	Canola	cytosol	28.37	50.83
Zm00001d034337_P005	Maize	cytosol	72.09	49.36
CDY52072	Canola	cytosol	34.88	48.7
CDX71554	Canola	cytosol	26.98	48.33
CDY06725	Canola	cytosol	34.42	47.13
CDY35888	Canola	mitochondrion	26.98	40.28
CDX82722	Canola	mitochondrion	26.98	40.28
CDY48729	Canola	mitochondrion	26.51	39.86
CDY03335	Canola	mitochondrion	26.51	39.86
CDX90681	Canola	cytosol	24.65	31.74
CDY28984	Canola	cytosol	24.65	25.12
CDX73778	Canola	cytosol, endoplasmic reticulum, nucleus	15.81	23.94

Protein Annotations

MapMan:22.1.2.4	Gene3D:3.30.450.60	GO:A0A078IME0	UniProt:A0A078IME0	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su
EnsemblPlants:CDY50208	ProteinID:CDY50208	ProteinID:CDY50208.1	InterPro:Clathrin_sm-chain_CS	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192
GO:GO:0030117	EnsemblPlantsGene:GSBRNA2T00096154001	InterPro:Longin-like_dom_sf	PFAM:PF01217	PIRSF:PIRSF015588	ScanProsite:PS00989
PANTHER:PTHR11753	PANTHER:PTHR11753:SF32	SUPFAM:SSF64356	TMHMM:TMhelix	UniParc:UPI0004EF2ED8	:

Description

BnaC07g06400DBnaC07g06400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IME0]

Coordinates

chrLK032889:+:106193..108296

Molecular Weight (calculated)

25030.4 Da

IEP (calculated)

6.502

GRAVY (calculated)

0.228

Length

215 amino acids

Sequence
(BLAST)

001: MYFQVQFVAS VSAEEFTLLS SCFPRSCTFY LVLCINLFLF FLLAQESWVG VLYFQIHFVL LVSRQGKVRL TKWYSPYTQK ERSKVIRELS GVILNRGPKL
101: CNFIEWRGYK VVYKRYASLY FCMCIDEADN ELEVLEIIHH YVEILDRYFG SVCELDLIFN FHKAYYILDE LLIAGELQES SKKTVARIIS AQDQLVEAAK
201: EEASSISNII AQATK

Best Arabidopsis Sequence Match ( AT2G17380.1 )
(BLAST)

001: MIHFVLLVSR QGKVRLTKWY SPYTQKERSK VIRELSGVIL NRGPKLCNFI EWRGYKVVYK RYASLYFCMC IDEADNELEV LEIIHHYVEI LDRYFGSVCE
101: LDLIFNFHKA YYILDELLIA GELQESSKKT VARIISAQDQ LVEVAKEEAS SISNIIAQAT K

Arabidopsis Description

AAP19-1AP-1 complex subunit sigma-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LEZ8]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.