CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 4
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99414
KRH45615
KRH69617
KRH74545

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17380.1	KRG99414	AT1G60780.1	23543752
AT2G17380.1	KRH45615	AT1G60780.1	23543752
AT2G17380.1	KRH69617	AT1G60780.1	23543752
AT2G17380.1	KRH74545	AT1G60780.1	23543752

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90038	Soybean	cytosol, mitochondrion	98.14	98.14
Os03t0783700-00	Rice	plasma membrane	90.06	90.06
TraesCS5B01G423600.1	Wheat	cytosol, mitochondrion	90.06	90.06
TraesCS5D01G430000.1	Wheat	cytosol, mitochondrion	90.06	90.06
AT4G35410.2	Thale cress	mitochondrion	88.82	88.27
Bra002054.1-P	Field mustard	cytosol, mitochondrion	88.2	88.2
AT2G17380.1	Thale cress	cytosol, mitochondrion	88.2	88.2
CDY69066	Canola	cytosol	88.2	80.23
HORVU5Hr1G102930.4	Barley	extracellular, golgi	89.44	80.0
HORVU5Hr1G102770.1	Barley	extracellular, golgi	89.44	80.0
KRH73467	Soybean	cytosol, mitochondrion	81.99	77.65
Zm00001d013128_P004	Maize	cytosol, plastid	88.2	75.13
CDX69137	Canola	extracellular	83.85	72.97
GSMUA_Achr8P15550_001	Banana	cytosol, mitochondrion	85.09	69.9
GSMUA_Achr3P24130_001	Banana	cytosol, mitochondrion	90.06	69.05
CDX75500	Canola	cytosol	84.47	67.0
Bra011613.1-P	Field mustard	cytosol	84.47	67.0
CDY50208	Canola	extracellular, plasma membrane	87.58	65.58
KXG37427	Sorghum	cytosol, nucleus, plastid	91.93	55.22
KRH05944	Soybean	mitochondrion	47.83	54.23
KRH17427	Soybean	mitochondrion	47.83	54.23
GSMUA_Achr9P11170_001	Banana	extracellular	86.96	51.47
Zm00001d034337_P005	Maize	cytosol	91.3	46.82
KRH74193	Soybean	mitochondrion	37.27	41.96
KRH49010	Soybean	mitochondrion	37.27	41.96
KRH69924	Soybean	cytosol, mitochondrion	36.65	35.54
KRH08275	Soybean	cytosol, mitochondrion	36.02	34.94
KRH60179	Soybean	cytosol	18.01	32.22

Protein Annotations

MapMan:22.1.2.4	Gene3D:3.30.450.60	UniProt:A0A0R4J4X2	EMBL:ACUP02007823	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su
InterPro:Clathrin_sm-chain_CS	ncoils:Coil	EnsemblPlantsGene:GLYMA_13G004600	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0008565	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030117	EnsemblPlants:KRH17634
ProteinID:KRH17634	ProteinID:KRH17634.1	InterPro:Longin-like_dom_sf	PFAM:PF01217	PIRSF:PIRSF015588	ScanProsite:PS00989
PANTHER:PTHR11753	PANTHER:PTHR11753:SF32	SUPFAM:SSF64356	UniParc:UPI000151E3E6	:	:

Description

hypothetical protein

Coordinates

chr13:-:1241891..1245722

Molecular Weight (calculated)

18743.7 Da

IEP (calculated)

7.447

GRAVY (calculated)

-0.087

Length

161 amino acids

Sequence
(BLAST)

001: MINFVLLISR QGKVRLTKWY SPYSQKERSK VIRELSGMIL SRAPKQCNFV EWRGHKVVYK RYASLYFCMC IDQDDNELEV LEIIHHFVEI LDRYFGSVCE
101: LDLIFNFHKA YYILDEILIA GELQESSKKT VARLIAAQDS LVENAKEEVS SLSNIIAQAT K

Best Arabidopsis Sequence Match ( AT4G35410.2 )
(BLAST)

001: MIHFVLLVSR QGKVRLTKWY SPYAQKERSK VIRELSGVIL NRGPKLCNFV EWRGYKVVYK RYASLYFCMC IDQEDNELEV LEIIHHYVEI LDRYFGSVCE
101: LDLIFNFHKA YYILDELLIA GELQESSKKT VARIISAQDQ LVEVAKEEAS SISNIIAQAT NR

Arabidopsis Description

AAP19-2AP-1 complex subunit sigma-2 [Source:UniProtKB/Swiss-Prot;Acc:O23685]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.