CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 3
plasma membrane 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49010	Soybean	mitochondrion	100.0	100.0
Solyc05g026130.2.1	Tomato	plastid	95.8	95.8
PGSC0003DMT400074468	Potato	mitochondrion	95.8	95.8
VIT_11s0016g02840.t01	Wine grape	cytosol, mitochondrion	90.21	94.85
AT2G19790.1	Thale cress	mitochondrion	93.71	93.71
Bra039020.1-P	Field mustard	mitochondrion	93.71	93.71
CDX82722	Canola	mitochondrion	93.71	93.06
CDY35888	Canola	mitochondrion	93.71	93.06
GSMUA_Achr4P10500_001	Banana	mitochondrion	93.71	93.06
Bra036702.1-P	Field mustard	mitochondrion	93.01	93.01
CDY03335	Canola	mitochondrion	93.01	93.01
CDY48729	Canola	mitochondrion	93.01	93.01
TraesCS6D01G101600.1	Wheat	cytosol, mitochondrion	91.61	91.61
TraesCS6B01G140700.1	Wheat	cytosol, mitochondrion	91.61	91.61
Zm00001d050256_P001	Maize	cytosol, mitochondrion	90.91	90.91
TraesCS6A01G113800.1	Wheat	cytosol, mitochondrion	90.91	90.91
KXG25094	Sorghum	cytosol, mitochondrion	90.91	90.91
Os08t0395300-01	Rice	cytosol, mitochondrion	90.21	90.21
Os10t0368400-01	Rice	cytosol, mitochondrion	88.81	88.81
KRH60179	Soybean	cytosol	46.85	74.44
KRH05944	Soybean	mitochondrion	44.76	45.07
KRH17427	Soybean	mitochondrion	44.76	45.07
KRG90038	Soybean	cytosol, mitochondrion	41.96	37.27
KRH17634	Soybean	endoplasmic reticulum	41.96	37.27
KRH73467	Soybean	cytosol, mitochondrion	41.26	34.71
KRH69924	Soybean	cytosol, mitochondrion	36.36	31.33
KRH08275	Soybean	cytosol, mitochondrion	34.27	29.52

Protein Annotations

EntrezGene:100306047	EntrezGene:100779465	MapMan:22.5.2.2.4	Gene3D:3.30.450.60	EMBL:ACUP02000008	EMBL:ACUP02004328
InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su	EMBL:BT089960	UniProt:C6SXR3	EnsemblPlantsGene:GLYMA_01G005300	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	ProteinID:KRH49010.1
EnsemblPlants:KRH74193	ProteinID:KRH74193	ProteinID:KRH74193.1	InterPro:Longin-like_dom_sf	PFAM:PF01217	PIRSF:PIRSF015588
PANTHER:PTHR11753	PANTHER:PTHR11753:SF4	SUPFAM:SSF64356	UniParc:UPI00019AA9A4	:	:

Description

hypothetical protein

Coordinates

chr1:-:518598..520667

Molecular Weight (calculated)

16918.7 Da

IEP (calculated)

5.270

GRAVY (calculated)

-0.120

Length

143 amino acids

Sequence
(BLAST)

001: MGIRFVLMVN KQGQTRLAQY YEYLTLEERR ALEGEIVRKC LARNEQQCSF VEHRNYKIVY RRYASLFFLV GVDDDENELA ILEFIHLLVE TMDRHFGNVC
101: ELDIMFHLEK AHFMLEEMVM NGCIVETSKS NILTPIQLMD KTS

Best Arabidopsis Sequence Match ( AT2G19790.1 )
(BLAST)

001: MGIRFILMVN KQGQTRLAQY YEWLTLEERR ALEGEIVRKC LARNDQQCSF VEHRNYKIVY RRYASLFFMV GVDDDENELA ILEFIHLLVE TMDKHFGNVC
101: ELDIMFHLEK AHFMLEEMVM NGCIVETSKA NILSPIQLMD KAH

Arabidopsis Description

AP-4 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:O82201]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.