Factsheet for PGSC0003DMT400074468

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 3
plasma membrane 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g026130.2.1	Tomato	plastid	100.0	100.0
VIT_11s0016g02840.t01	Wine grape	cytosol, mitochondrion	93.01	97.79
KRH49010	Soybean	mitochondrion	95.8	95.8
KRH74193	Soybean	mitochondrion	95.8	95.8
AT2G19790.1	Thale cress	mitochondrion	93.71	93.71
Bra039020.1-P	Field mustard	mitochondrion	93.71	93.71
CDY35888	Canola	mitochondrion	93.71	93.06
CDX82722	Canola	mitochondrion	93.71	93.06
CDY03335	Canola	mitochondrion	93.01	93.01
CDY48729	Canola	mitochondrion	93.01	93.01
Bra036702.1-P	Field mustard	mitochondrion	93.01	93.01
GSMUA_Achr4P10500_001	Banana	mitochondrion	92.31	91.67
TraesCS6D01G101600.1	Wheat	cytosol, mitochondrion	89.51	89.51
TraesCS6B01G140700.1	Wheat	cytosol, mitochondrion	89.51	89.51
KXG25094	Sorghum	cytosol, mitochondrion	88.81	88.81
TraesCS6A01G113800.1	Wheat	cytosol, mitochondrion	88.81	88.81
Zm00001d050256_P001	Maize	cytosol, mitochondrion	88.11	88.11
Os08t0395300-01	Rice	cytosol, mitochondrion	88.11	88.11
Os10t0368400-01	Rice	cytosol, mitochondrion	86.71	86.71
KRH60179	Soybean	cytosol	46.85	74.44
PGSC0003DMT400025529	Potato	mitochondrion	45.45	45.77
PGSC0003DMT400015459	Potato	cytosol	38.46	38.46
PGSC0003DMT400015461	Potato	cytosol, mitochondrion	42.66	37.89
PGSC0003DMT400009269	Potato	cytosol	30.77	26.99
PGSC0003DMT400001875	Potato	cytosol	25.17	21.43

Protein Annotations

EntrezGene:102605220	MapMan:22.5.2.2.4	Gene3D:3.30.450.60	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0005802	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031
GO:GO:0016020	GO:GO:0016192	GO:GO:0030124	InterPro:Longin-like_dom_sf	UniProt:M1CTQ4	PFAM:PF01217
EnsemblPlantsGene:PGSC0003DMG400028942	PGSC:PGSC0003DMG400028942	EnsemblPlants:PGSC0003DMT400074468	PIRSF:PIRSF015588	PANTHER:PTHR11753	PANTHER:PTHR11753:SF4
SUPFAM:SSF64356	UniParc:UPI0002765EDA	RefSeq:XP_006338193.1	:	:	:

Description

AP-4 complex subunit sigma-1 [Source:PGSC_GENE;Acc:PGSC0003DMG400028942]

Coordinates

chr5:+:22627765..22635688

Molecular Weight (calculated)

16886.7 Da

IEP (calculated)

5.617

GRAVY (calculated)

-0.063

Length

143 amino acids

Sequence
(BLAST)

001: MGIRFILMVN KQGQTRLAQY YEYLTLEERR ALEGEIVRKC LARNEQQCSF VEHRTYKIVY RRYASLFFLV GVDNEENELA ILEFIHLLVE TMDRHFGNVC
101: ELDIMFHLEK AHFMLEEMVM NGCIVETSKA NILTPIQLMD KAS

Best Arabidopsis Sequence Match ( AT2G19790.1 )
(BLAST)

001: MGIRFILMVN KQGQTRLAQY YEWLTLEERR ALEGEIVRKC LARNDQQCSF VEHRNYKIVY RRYASLFFMV GVDDDENELA ILEFIHLLVE TMDKHFGNVC
101: ELDIMFHLEK AHFMLEEMVM NGCIVETSKA NILSPIQLMD KAH

Arabidopsis Description

AP-4 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:O82201]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.