CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 5
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036702.1-P	Field mustard	mitochondrion	100.0	100.0
CDY03335	Canola	mitochondrion	100.0	100.0
AT2G19790.1	Thale cress	mitochondrion	99.3	99.3
CDX82722	Canola	mitochondrion	99.3	98.61
CDY35888	Canola	mitochondrion	99.3	98.61
Solyc05g026130.2.1	Tomato	plastid	93.01	93.01
PGSC0003DMT400074468	Potato	mitochondrion	93.01	93.01
KRH74193	Soybean	mitochondrion	93.01	93.01
KRH49010	Soybean	mitochondrion	93.01	93.01
VIT_11s0016g02840.t01	Wine grape	cytosol, mitochondrion	87.41	91.91
GSMUA_Achr4P10500_001	Banana	mitochondrion	90.91	90.28
TraesCS6D01G101600.1	Wheat	cytosol, mitochondrion	88.11	88.11
TraesCS6B01G140700.1	Wheat	cytosol, mitochondrion	88.11	88.11
TraesCS6A01G113800.1	Wheat	cytosol, mitochondrion	88.11	88.11
Zm00001d050256_P001	Maize	cytosol, mitochondrion	87.41	87.41
KXG25094	Sorghum	cytosol, mitochondrion	87.41	87.41
Os08t0395300-01	Rice	cytosol, mitochondrion	86.71	86.71
Os10t0368400-01	Rice	cytosol, mitochondrion	85.31	85.31
KRH60179	Soybean	cytosol	46.15	73.33
CDY63352	Canola	cytosol, mitochondrion	44.06	43.45
CDY52072	Canola	cytosol	44.06	40.91
CDY70589	Canola	cytosol	34.27	40.83
CDX71554	Canola	cytosol	34.27	40.83
CDY06725	Canola	cytosol	44.76	40.76
CDY69066	Canola	cytosol	39.86	32.2
CDX69137	Canola	extracellular	40.56	31.35
CDX90681	Canola	cytosol	36.36	31.14
CDX75500	Canola	cytosol	41.26	29.06
CDY50208	Canola	extracellular, plasma membrane	39.86	26.51
CDY28984	Canola	cytosol	37.06	25.12
CDX73778	Canola	cytosol, endoplasmic reticulum, nucleus	21.68	21.83

Protein Annotations

MapMan:22.5.2.2.4	Gene3D:3.30.450.60	GO:A0A078EMX8	UniProt:A0A078EMX8	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su
EnsemblPlants:CDY48729	ProteinID:CDY48729	ProteinID:CDY48729.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565
GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	EnsemblPlantsGene:GSBRNA2T00091621001	InterPro:Longin-like_dom_sf	PFAM:PF01217
PIRSF:PIRSF015588	PANTHER:PTHR11753	PANTHER:PTHR11753:SF4	SUPFAM:SSF64356	UniParc:UPI00019AA981	:

Description

BnaA09g10040DBnaA09g10040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078EMX8]

Coordinates

chrLK032788:+:74802..75804

Molecular Weight (calculated)

16920.7 Da

IEP (calculated)

5.926

GRAVY (calculated)

-0.106

Length

143 amino acids

Sequence
(BLAST)

001: MGIRFILMVN KQGQTRLAQY YEWLTLEQRR ALEGEIVRKC LARNDQQCSF VEHRNYKIVY RRYASLFFMV GVDDDENELA ILEFIHLLVE TMDKHFGNVC
101: ELDIMFHLEK AHFMLEEMVM NGCIVETSKA NILSPIQLMD KAH

Best Arabidopsis Sequence Match ( AT2G19790.1 )
(BLAST)

001: MGIRFILMVN KQGQTRLAQY YEWLTLEERR ALEGEIVRKC LARNDQQCSF VEHRNYKIVY RRYASLFFMV GVDDDENELA ILEFIHLLVE TMDKHFGNVC
101: ELDIMFHLEK AHFMLEEMVM NGCIVETSKA NILSPIQLMD KAH

Arabidopsis Description

AP-4 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:O82201]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.