CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039020.1-P	Field mustard	mitochondrion	99.31	100.0
AT2G19790.1	Thale cress	mitochondrion	99.31	100.0
CDY35888	Canola	mitochondrion	100.0	100.0
CDY03335	Canola	mitochondrion	98.61	99.3
CDY48729	Canola	mitochondrion	98.61	99.3
Solyc05g026130.2.1	Tomato	plastid	93.06	93.71
PGSC0003DMT400074468	Potato	mitochondrion	93.06	93.71
KRH74193	Soybean	mitochondrion	93.06	93.71
KRH49010	Soybean	mitochondrion	93.06	93.71
VIT_11s0016g02840.t01	Wine grape	cytosol, mitochondrion	87.5	92.65
GSMUA_Achr4P10500_001	Banana	mitochondrion	90.97	90.97
TraesCS6D01G101600.1	Wheat	cytosol, mitochondrion	88.19	88.81
TraesCS6B01G140700.1	Wheat	cytosol, mitochondrion	88.19	88.81
TraesCS6A01G113800.1	Wheat	cytosol, mitochondrion	88.19	88.81
Zm00001d050256_P001	Maize	cytosol, mitochondrion	87.5	88.11
KXG25094	Sorghum	cytosol, mitochondrion	87.5	88.11
Os08t0395300-01	Rice	cytosol, mitochondrion	86.81	87.41
Os10t0368400-01	Rice	cytosol, mitochondrion	85.42	86.01
KRH60179	Soybean	cytosol	45.14	72.22
CDY63352	Canola	cytosol, mitochondrion	44.44	44.14
CDY70589	Canola	cytosol	34.72	41.67
CDY52072	Canola	cytosol	44.44	41.56
CDY06725	Canola	cytosol	45.14	41.4
CDX71554	Canola	cytosol	34.03	40.83
CDY69066	Canola	cytosol	40.28	32.77
CDX69137	Canola	extracellular	40.97	31.89
CDX90681	Canola	cytosol	36.81	31.74
CDX75500	Canola	cytosol	41.67	29.56
CDY50208	Canola	extracellular, plasma membrane	40.28	26.98
CDY28984	Canola	cytosol	37.5	25.59
CDX73778	Canola	cytosol, endoplasmic reticulum, nucleus	21.53	21.83

Protein Annotations

MapMan:22.5.2.2.4	Gene3D:3.30.450.60	GO:A0A078D0R7	UniProt:A0A078D0R7	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su
EnsemblPlants:CDX82722	ProteinID:CDX82722	ProteinID:CDX82722.1	ProteinID:CDY35888.1	ncoils:Coil	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	EnsemblPlantsGene:GSBRNA2T00137994001
InterPro:Longin-like_dom_sf	PFAM:PF01217	PIRSF:PIRSF015588	PANTHER:PTHR11753	PANTHER:PTHR11753:SF4	SUPFAM:SSF64356
UniParc:UPI0004EE13F3	:	:	:	:	:

Description

BnaC07g01440DBnaA07g00990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078D0R7]

Coordinates

chrLK031829:+:1636891..1638066

Molecular Weight (calculated)

17049.9 Da

IEP (calculated)

5.574

GRAVY (calculated)

-0.130

Length

144 amino acids

Sequence
(BLAST)

001: MGIRFILMVN KQGQTRLAQY YEWLTLEERR ALEGEIVRKC LARNDQQQCS FVEHRNYKIV YRRYASLFFM VGVDDDENEL AILEFIHLLV ETMDKHFGNV
101: CELDIMFHLE KAHFMLEEMV MNGCIVETSK ANILSPIQLM DKAH

Best Arabidopsis Sequence Match ( AT2G19790.1 )
(BLAST)

001: MGIRFILMVN KQGQTRLAQY YEWLTLEERR ALEGEIVRKC LARNDQQCSF VEHRNYKIVY RRYASLFFMV GVDDDENELA ILEFIHLLVE TMDKHFGNVC
101: ELDIMFHLEK AHFMLEEMVM NGCIVETSKA NILSPIQLMD KAH

Arabidopsis Description

AP-4 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:O82201]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.