CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0016g02840.t01	Wine grape	cytosol, mitochondrion	73.33	48.53
KRH49010	Soybean	mitochondrion	74.44	46.85
Zm00001d050256_P001	Maize	cytosol, mitochondrion	74.44	46.85
TraesCS6D01G101600.1	Wheat	cytosol, mitochondrion	74.44	46.85
TraesCS6B01G140700.1	Wheat	cytosol, mitochondrion	74.44	46.85
Solyc05g026130.2.1	Tomato	plastid	74.44	46.85
PGSC0003DMT400074468	Potato	mitochondrion	74.44	46.85
KXG25094	Sorghum	cytosol, mitochondrion	74.44	46.85
KRH74193	Soybean	mitochondrion	74.44	46.85
Bra036702.1-P	Field mustard	mitochondrion	73.33	46.15
CDY03335	Canola	mitochondrion	73.33	46.15
TraesCS6A01G113800.1	Wheat	cytosol, mitochondrion	73.33	46.15
CDY48729	Canola	mitochondrion	73.33	46.15
Os08t0395300-01	Rice	cytosol, mitochondrion	72.22	45.45
Bra039020.1-P	Field mustard	mitochondrion	72.22	45.45
AT2G19790.1	Thale cress	mitochondrion	72.22	45.45
GSMUA_Achr4P10500_001	Banana	mitochondrion	72.22	45.14
CDY35888	Canola	mitochondrion	72.22	45.14
CDX82722	Canola	mitochondrion	72.22	45.14
Os10t0368400-01	Rice	cytosol, mitochondrion	71.11	44.76
KRH05944	Soybean	mitochondrion	34.44	21.83
KRH17427	Soybean	mitochondrion	34.44	21.83
KRH73467	Soybean	cytosol, mitochondrion	34.44	18.24
KRG90038	Soybean	cytosol, mitochondrion	32.22	18.01
KRH17634	Soybean	endoplasmic reticulum	32.22	18.01
KRH69924	Soybean	cytosol, mitochondrion	32.22	17.47
KRH08275	Soybean	cytosol, mitochondrion	31.11	16.87

Protein Annotations

Gene3D:3.30.450.60	MapMan:35.1	EMBL:ACUP02003352	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su	EnsemblPlantsGene:GLYMA_05G224800
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0008565
GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	UniProt:K7KRS6	EnsemblPlants:KRH60179	ProteinID:KRH60179
ProteinID:KRH60179.1	InterPro:Longin-like_dom_sf	PFAM:PF01217	PANTHER:PTHR11753	PANTHER:PTHR11753:SF4	SUPFAM:SSF64356
UniParc:UPI00029670D9	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:40362481..40363717

Molecular Weight (calculated)

10379.6 Da

IEP (calculated)

4.306

GRAVY (calculated)

0.034

Length

90 amino acids

Sequence
(BLAST)

1: MSSYVTCLLD QNENQRNTQD VSLNELAILE FIHLLVETMD RHFGNVNELD IMFHLEKVHF MLEEIVMNGC IVETSKANIL SPIQLLDKTS

Best Arabidopsis Sequence Match ( AT2G19790.1 )
(BLAST)

001: MGIRFILMVN KQGQTRLAQY YEWLTLEERR ALEGEIVRKC LARNDQQCSF VEHRNYKIVY RRYASLFFMV GVDDDENELA ILEFIHLLVE TMDKHFGNVC
101: ELDIMFHLEK AHFMLEEMVM NGCIVETSKA NILSPIQLMD KAH

Arabidopsis Description

AP-4 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:O82201]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.