CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 3
plasma membrane 2
golgi 2
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	golgi, nucleus, plasma membrane
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH17427	Soybean	mitochondrion	99.3	99.3
Zm00001d007270_P001	Maize	mitochondrion	97.89	97.89
EES08264	Sorghum	mitochondrion	97.89	97.89
EES16862	Sorghum	cytosol	97.18	97.18
Os12t0207300-01	Rice	plasma membrane	97.18	97.18
HORVU5Hr1G033310.1	Barley	mitochondrion	96.48	96.48
TraesCS5D01G119700.1	Wheat	mitochondrion	96.48	96.48
TraesCS5B01G113000.1	Wheat	cytosol	95.77	95.77
Solyc04g081410.2.1	Tomato	plastid	95.07	95.07
PGSC0003DMT400025529	Potato	mitochondrion	95.07	95.07
AT1G47830.1	Thale cress	mitochondrion	93.66	93.66
CDY63352	Canola	cytosol, mitochondrion	95.07	93.1
CDY70589	Canola	cytosol	77.46	91.67
TraesCS5A01G112300.2	Wheat	mitochondrion	92.25	91.61
CDY52072	Canola	cytosol	95.07	87.66
Bra027439.1-P	Field mustard	cytosol	95.07	87.66
CDY06725	Canola	cytosol	94.37	85.35
Bra015600.1-P	Field mustard	cytosol, mitochondrion	94.37	85.35
Zm00001d041778_P006	Maize	cytosol, mitochondrion	88.03	80.13
GSMUA_Achr8P19280_001	Banana	cytosol	95.07	79.88
CDX71554	Canola	cytosol	66.2	78.33
VIT_18s0001g14240.t01	Wine grape	cytosol	95.77	72.34
KRH17634	Soybean	endoplasmic reticulum	54.23	47.83
KRG90038	Soybean	cytosol, mitochondrion	54.23	47.83
KRH74193	Soybean	mitochondrion	45.07	44.76
KRH49010	Soybean	mitochondrion	45.07	44.76
KRH73467	Soybean	cytosol, mitochondrion	52.82	44.12
KRH69924	Soybean	cytosol, mitochondrion	40.85	34.94
KRH08275	Soybean	cytosol, mitochondrion	40.85	34.94
KRH60179	Soybean	cytosol	21.83	34.44

Protein Annotations

EntrezGene:100500054	MapMan:22.1.3.4	Gene3D:3.30.450.60	EMBL:ACUP02010784	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su
EMBL:BT090697	UniProt:C6SZU4	EnsemblPlantsGene:GLYMA_17G257900	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565
GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	EnsemblPlants:KRH05944	ProteinID:KRH05944	ProteinID:KRH05944.1
InterPro:Longin-like_dom_sf	PFAM:PF01217	PIRSF:PIRSF015588	PANTHER:PTHR11753	PANTHER:PTHR11753:SF17	SUPFAM:SSF64356
UniParc:UPI00019AA9A3	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:41193881..41196030

Molecular Weight (calculated)

17082.8 Da

IEP (calculated)

6.240

GRAVY (calculated)

-0.096

Length

142 amino acids

Sequence
(BLAST)

001: MIRFILLQNR QGKTRLAKYY VPLEDSEKHK VEYEVHRLVV NRDPKYTNFV EFRTHKIIYR RYAGLFFSLC VDITDNELAY LECIHLFVEI LDHFFSNVCE
101: LDLVFNFHKV YLILDEFILA GELQETSKKA IIERMGELEK LE

Best Arabidopsis Sequence Match ( AT1G47830.1 )
(BLAST)

001: MIRFILLQNR QGKTRLAKYY VPLEESEKHK VEYEVHRLVV NRDAKFTNFV EFRTHKVIYR RYAGLFFSVC VDITDNELAY LESIHLFVEI LDHFFSNVCE
101: LDLVFNFHKV YLILDEFILA GELQETSKRA IIERMSELEK LQ

Arabidopsis Description

AP17AP-2 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:Q84WL9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.