Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G119700.1 | Wheat | mitochondrion | 94.41 | 95.07 |
| HORVU5Hr1G033310.1 | Barley | mitochondrion | 94.41 | 95.07 |
| TraesCS5B01G113000.1 | Wheat | cytosol | 93.71 | 94.37 |
| EES16862 | Sorghum | cytosol | 92.31 | 92.96 |
| KRH17427 | Soybean | mitochondrion | 92.31 | 92.96 |
| Os12t0207300-01 | Rice | plasma membrane | 92.31 | 92.96 |
| KRH05944 | Soybean | mitochondrion | 91.61 | 92.25 |
| Solyc04g081410.2.1 | Tomato | plastid | 90.21 | 90.85 |
| PGSC0003DMT400025529 | Potato | mitochondrion | 90.21 | 90.85 |
| AT1G47830.1 | Thale cress | mitochondrion | 89.51 | 90.14 |
| CDY63352 | Canola | cytosol, mitochondrion | 89.51 | 88.28 |
| CDY70589 | Canola | cytosol | 72.73 | 86.67 |
| Bra027439.1-P | Field mustard | cytosol | 89.51 | 83.12 |
| CDY52072 | Canola | cytosol | 89.51 | 83.12 |
| Bra015600.1-P | Field mustard | cytosol, mitochondrion | 89.51 | 81.53 |
| CDY06725 | Canola | cytosol | 89.51 | 81.53 |
| Zm00001d041778_P006 | Maize | cytosol, mitochondrion | 88.11 | 80.77 |
| CDX71554 | Canola | cytosol | 65.03 | 77.5 |
| GSMUA_Achr8P19280_001 | Banana | cytosol | 89.51 | 75.74 |
| VIT_04s0023g03340.t01 | Wine grape | cytosol | 90.21 | 75.0 |
| VIT_18s0001g14240.t01 | Wine grape | cytosol | 90.91 | 69.15 |
| TraesCS6A01G113800.1 | Wheat | cytosol, mitochondrion | 44.06 | 44.06 |
| TraesCS4A01G078400.1 | Wheat | cytosol | 37.76 | 32.53 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G112300.2 | EnsemblPlantsGene:TraesCS5A01G112300 | Gene3D:3.30.450.60 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 |
| InterPro:AP_complex_ssu | InterPro:AP_mu_sigma_su | InterPro:Longin-like_dom_sf | PANTHER:PTHR11753 | PANTHER:PTHR11753:SF17 | PFAM:PF01217 |
| PIRSF:PIRSF015588 | SUPFAM:SSF64356 | MapMan:22.1.3.4 | : | : | : |
Description
No Description!
Coordinates
chr5A:+:218990475..218994498
Molecular Weight (calculated)
17039.9 Da
IEP (calculated)
7.111
GRAVY (calculated)
0.028
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MIRFILLQNR QGKTRLAKYY VPLEDSEKHK VEYEVHRLVV NRDPKFTNFV EFRTHKVIYR RYAGLFFSIC VDITDNDLVY LECIHLFVEI LDHFFSNVCE
101: LDLVFNFHKV YLILDEFILA GELQETSKKA IIERMGVPAC MGR
101: LDLVFNFHKV YLILDEFILA GELQETSKKA IIERMGVPAC MGR
001: MIRFILLQNR QGKTRLAKYY VPLEESEKHK VEYEVHRLVV NRDAKFTNFV EFRTHKVIYR RYAGLFFSVC VDITDNELAY LESIHLFVEI LDHFFSNVCE
101: LDLVFNFHKV YLILDEFILA GELQETSKRA IIERMSELEK LQ
101: LDLVFNFHKV YLILDEFILA GELQETSKRA IIERMSELEK LQ
Arabidopsis Description
AP17AP-2 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:Q84WL9]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.