Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- plasma membrane 1
- golgi 1
- mitochondrion 4
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
plastid:
26371478
|
msms PMID:
26371478
doi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400025529 | Potato | mitochondrion | 100.0 | 100.0 |
Os12t0207300-01 | Rice | plasma membrane | 96.48 | 96.48 |
EES16862 | Sorghum | cytosol | 96.48 | 96.48 |
AT1G47830.1 | Thale cress | mitochondrion | 95.77 | 95.77 |
EES08264 | Sorghum | mitochondrion | 95.77 | 95.77 |
Zm00001d007270_P001 | Maize | mitochondrion | 95.77 | 95.77 |
KRH05944 | Soybean | mitochondrion | 95.07 | 95.07 |
TraesCS5D01G119700.1 | Wheat | mitochondrion | 94.37 | 94.37 |
HORVU5Hr1G033310.1 | Barley | mitochondrion | 94.37 | 94.37 |
KRH17427 | Soybean | mitochondrion | 94.37 | 94.37 |
CDY63352 | Canola | cytosol, mitochondrion | 95.77 | 93.79 |
TraesCS5B01G113000.1 | Wheat | cytosol | 93.66 | 93.66 |
CDY70589 | Canola | cytosol | 78.17 | 92.5 |
TraesCS5A01G112300.2 | Wheat | mitochondrion | 90.85 | 90.21 |
CDY52072 | Canola | cytosol | 95.77 | 88.31 |
Bra027439.1-P | Field mustard | cytosol | 95.77 | 88.31 |
Bra015600.1-P | Field mustard | cytosol, mitochondrion | 95.07 | 85.99 |
CDY06725 | Canola | cytosol | 95.07 | 85.99 |
GSMUA_Achr8P19280_001 | Banana | cytosol | 97.18 | 81.66 |
Zm00001d041778_P006 | Maize | cytosol, mitochondrion | 88.03 | 80.13 |
CDX71554 | Canola | cytosol | 67.61 | 80.0 |
VIT_04s0023g03340.t01 | Wine grape | cytosol | 95.77 | 79.07 |
VIT_18s0001g14240.t01 | Wine grape | cytosol | 96.48 | 72.87 |
Solyc11g005220.1.1 | Tomato | nucleus | 52.82 | 46.58 |
Solyc05g026130.2.1 | Tomato | plastid | 45.77 | 45.45 |
Solyc01g109640.2.1 | Tomato | cytosol | 40.14 | 34.55 |
Solyc02g085240.2.1 | Tomato | cytosol | 38.73 | 32.93 |
Protein Annotations
MapMan:22.1.3.4 | Gene3D:3.30.450.60 | InterPro:AP_complex_ssu | InterPro:AP_mu_sigma_su | GO:GO:0003674 | GO:GO:0005215 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 |
GO:GO:0008565 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016192 | UniProt:K4BVM0 | InterPro:Longin-like_dom_sf |
PFAM:PF01217 | PIRSF:PIRSF015588 | PANTHER:PTHR11753 | PANTHER:PTHR11753:SF17 | SUPFAM:SSF64356 | EnsemblPlantsGene:Solyc04g081410.2 |
EnsemblPlants:Solyc04g081410.2.1 | UniParc:UPI0002766061 | : | : | : | : |
Description
AP-2 complex subunit sigma [Source:Projected from Arabidopsis thaliana (AT1G47830) UniProtKB/Swiss-Prot;Acc:Q84WL9]
Coordinates
chr4:+:65400088..65403153
Molecular Weight (calculated)
17107.8 Da
IEP (calculated)
6.242
GRAVY (calculated)
-0.146
Length
142 amino acids
Sequence
(BLAST)
(BLAST)
001: MIRFILLQNR QGKTRLAKYY IPLEESEKHK VEYEVHRLVV NRDPKFTNFV EFRTHKVIYR RYAGLFFSLC VDITDNELAY LESIHLFVEI LDHFFSNVCE
101: LDLVFNFHKV YLILDEFILA GELQETSKRA IIERMGELEK QE
101: LDLVFNFHKV YLILDEFILA GELQETSKRA IIERMGELEK QE
001: MIRFILLQNR QGKTRLAKYY VPLEESEKHK VEYEVHRLVV NRDAKFTNFV EFRTHKVIYR RYAGLFFSVC VDITDNELAY LESIHLFVEI LDHFFSNVCE
101: LDLVFNFHKV YLILDEFILA GELQETSKRA IIERMSELEK LQ
101: LDLVFNFHKV YLILDEFILA GELQETSKRA IIERMSELEK LQ
Arabidopsis Description
AP17AP-2 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:Q84WL9]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.