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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 1
  • cytosol 3
  • plasma membrane 1
  • golgi 1
  • mitochondrion 4
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, golgi, mitochondrion, plasma membrane, plastid
BaCelLo:plastid
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:golgi, plasma membrane
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:cytosol
plastid: 26371478
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400025529 Potato mitochondrion 100.0 100.0
Os12t0207300-01 Rice plasma membrane 96.48 96.48
EES16862 Sorghum cytosol 96.48 96.48
AT1G47830.1 Thale cress mitochondrion 95.77 95.77
EES08264 Sorghum mitochondrion 95.77 95.77
Zm00001d007270_P001 Maize mitochondrion 95.77 95.77
KRH05944 Soybean mitochondrion 95.07 95.07
TraesCS5D01G119700.1 Wheat mitochondrion 94.37 94.37
HORVU5Hr1G033310.1 Barley mitochondrion 94.37 94.37
KRH17427 Soybean mitochondrion 94.37 94.37
CDY63352 Canola cytosol, mitochondrion 95.77 93.79
TraesCS5B01G113000.1 Wheat cytosol 93.66 93.66
CDY70589 Canola cytosol 78.17 92.5
TraesCS5A01G112300.2 Wheat mitochondrion 90.85 90.21
CDY52072 Canola cytosol 95.77 88.31
Bra027439.1-P Field mustard cytosol 95.77 88.31
Bra015600.1-P Field mustard cytosol, mitochondrion 95.07 85.99
CDY06725 Canola cytosol 95.07 85.99
GSMUA_Achr8P19280_001 Banana cytosol 97.18 81.66
Zm00001d041778_P006 Maize cytosol, mitochondrion 88.03 80.13
CDX71554 Canola cytosol 67.61 80.0
VIT_04s0023g03340.t01 Wine grape cytosol 95.77 79.07
VIT_18s0001g14240.t01 Wine grape cytosol 96.48 72.87
Solyc11g005220.1.1 Tomato nucleus 52.82 46.58
Solyc05g026130.2.1 Tomato plastid 45.77 45.45
Solyc01g109640.2.1 Tomato cytosol 40.14 34.55
Solyc02g085240.2.1 Tomato cytosol 38.73 32.93
Protein Annotations
MapMan:22.1.3.4Gene3D:3.30.450.60InterPro:AP_complex_ssuInterPro:AP_mu_sigma_suGO:GO:0003674GO:GO:0005215
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0006810GO:GO:0006886GO:GO:0008150
GO:GO:0008565GO:GO:0015031GO:GO:0016020GO:GO:0016192UniProt:K4BVM0InterPro:Longin-like_dom_sf
PFAM:PF01217PIRSF:PIRSF015588PANTHER:PTHR11753PANTHER:PTHR11753:SF17SUPFAM:SSF64356EnsemblPlantsGene:Solyc04g081410.2
EnsemblPlants:Solyc04g081410.2.1UniParc:UPI0002766061::::
Description
AP-2 complex subunit sigma [Source:Projected from Arabidopsis thaliana (AT1G47830) UniProtKB/Swiss-Prot;Acc:Q84WL9]
Coordinates
chr4:+:65400088..65403153
Molecular Weight (calculated)
17107.8 Da
IEP (calculated)
6.242
GRAVY (calculated)
-0.146
Length
142 amino acids
Sequence
(BLAST)
001: MIRFILLQNR QGKTRLAKYY IPLEESEKHK VEYEVHRLVV NRDPKFTNFV EFRTHKVIYR RYAGLFFSLC VDITDNELAY LESIHLFVEI LDHFFSNVCE
101: LDLVFNFHKV YLILDEFILA GELQETSKRA IIERMGELEK QE
Best Arabidopsis Sequence Match ( AT1G47830.1 )
(BLAST)
001: MIRFILLQNR QGKTRLAKYY VPLEESEKHK VEYEVHRLVV NRDAKFTNFV EFRTHKVIYR RYAGLFFSVC VDITDNELAY LESIHLFVEI LDHFFSNVCE
101: LDLVFNFHKV YLILDEFILA GELQETSKRA IIERMSELEK LQ
Arabidopsis Description
AP17AP-2 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:Q84WL9]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.