Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G119700.1 | Wheat | mitochondrion | 99.3 | 99.3 |
| HORVU5Hr1G033310.1 | Barley | mitochondrion | 99.3 | 99.3 |
| EES16862 | Sorghum | cytosol | 96.48 | 96.48 |
| KRH17427 | Soybean | mitochondrion | 96.48 | 96.48 |
| Os12t0207300-01 | Rice | plasma membrane | 96.48 | 96.48 |
| KRH05944 | Soybean | mitochondrion | 95.77 | 95.77 |
| TraesCS5A01G112300.2 | Wheat | mitochondrion | 94.37 | 93.71 |
| AT1G47830.1 | Thale cress | mitochondrion | 93.66 | 93.66 |
| Solyc04g081410.2.1 | Tomato | plastid | 93.66 | 93.66 |
| PGSC0003DMT400025529 | Potato | mitochondrion | 93.66 | 93.66 |
| CDY63352 | Canola | cytosol, mitochondrion | 94.37 | 92.41 |
| CDY70589 | Canola | cytosol | 77.46 | 91.67 |
| Bra027439.1-P | Field mustard | cytosol | 95.07 | 87.66 |
| CDY52072 | Canola | cytosol | 95.07 | 87.66 |
| Bra015600.1-P | Field mustard | cytosol, mitochondrion | 94.37 | 85.35 |
| CDY06725 | Canola | cytosol | 94.37 | 85.35 |
| Zm00001d041778_P006 | Maize | cytosol, mitochondrion | 88.73 | 80.77 |
| CDX71554 | Canola | cytosol | 66.2 | 78.33 |
| GSMUA_Achr8P19280_001 | Banana | cytosol | 92.96 | 78.11 |
| VIT_04s0023g03340.t01 | Wine grape | cytosol | 94.37 | 77.91 |
| VIT_18s0001g14240.t01 | Wine grape | cytosol | 94.37 | 71.28 |
| TraesCS5B01G423600.1 | Wheat | cytosol, mitochondrion | 53.52 | 47.2 |
| TraesCS6B01G140700.1 | Wheat | cytosol, mitochondrion | 46.48 | 46.15 |
| TraesCS4B01G234400.1 | Wheat | cytosol | 38.03 | 32.53 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G113000.1 | EnsemblPlantsGene:TraesCS5B01G113000 | Gene3D:3.30.450.60 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 |
| InterPro:AP_complex_ssu | InterPro:AP_mu_sigma_su | InterPro:Longin-like_dom_sf | PANTHER:PTHR11753 | PANTHER:PTHR11753:SF17 | PFAM:PF01217 |
| PIRSF:PIRSF015588 | SUPFAM:SSF64356 | MapMan:22.1.3.4 | : | : | : |
Description
No Description!
Coordinates
chr5B:-:179221084..179225980
Molecular Weight (calculated)
17063.7 Da
IEP (calculated)
6.239
GRAVY (calculated)
-0.085
Length
142 amino acids
Sequence
(BLAST)
(BLAST)
001: QIRFILLQNR QGKTRLAKYY VPLEDSEKHK VEYEVHRLVV NRDPKFTNFV EFRTHKVIYR RYAGLFFSIC VDITDNELVY LECIHLFVEI LDHFFSNVCE
101: LDLVFNFHKV YLILDEFILA GELQETSKKA IIERMGELEK LD
101: LDLVFNFHKV YLILDEFILA GELQETSKKA IIERMGELEK LD
001: MIRFILLQNR QGKTRLAKYY VPLEESEKHK VEYEVHRLVV NRDAKFTNFV EFRTHKVIYR RYAGLFFSVC VDITDNELAY LESIHLFVEI LDHFFSNVCE
101: LDLVFNFHKV YLILDEFILA GELQETSKRA IIERMSELEK LQ
101: LDLVFNFHKV YLILDEFILA GELQETSKRA IIERMSELEK LQ
Arabidopsis Description
AP17AP-2 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:Q84WL9]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.