Factsheet for Bra015600.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 3
cytosol 3
plasma membrane 1
golgi 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06725	Canola	cytosol	99.36	99.36
CDY70589	Canola	cytosol	75.16	98.33
AT1G47830.1	Thale cress	mitochondrion	88.53	97.89
EES16862	Sorghum	cytosol	87.26	96.48
Os12t0207300-01	Rice	plasma membrane	87.26	96.48
Zm00001d007270_P001	Maize	mitochondrion	86.62	95.77
EES08264	Sorghum	mitochondrion	86.62	95.77
Solyc04g081410.2.1	Tomato	plastid	85.99	95.07
PGSC0003DMT400025529	Potato	mitochondrion	85.99	95.07
TraesCS5D01G119700.1	Wheat	mitochondrion	85.35	94.37
TraesCS5B01G113000.1	Wheat	cytosol	85.35	94.37
HORVU5Hr1G033310.1	Barley	mitochondrion	85.35	94.37
KRH05944	Soybean	mitochondrion	85.35	94.37
KRH17427	Soybean	mitochondrion	85.35	94.37
Bra027439.1-P	Field mustard	cytosol	89.17	90.91
TraesCS5A01G112300.2	Wheat	mitochondrion	81.53	89.51
Zm00001d041778_P006	Maize	cytosol, mitochondrion	79.62	80.13
GSMUA_Achr8P19280_001	Banana	cytosol	85.99	79.88
VIT_04s0023g03340.t01	Wine grape	cytosol	85.35	77.91
VIT_18s0001g14240.t01	Wine grape	cytosol	87.9	73.4
Bra002054.1-P	Field mustard	cytosol, mitochondrion	47.13	45.96
Bra039020.1-P	Field mustard	mitochondrion	41.4	45.45
Bra036702.1-P	Field mustard	mitochondrion	40.76	44.76
Bra011613.1-P	Field mustard	cytosol	46.5	35.96
Bra012884.1-P	Field mustard	cytosol	35.67	33.53
Bra036855.1-P	Field mustard	cytosol	16.56	28.89

Protein Annotations

MapMan:22.1.3.4	Gene3D:3.30.450.60	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su	EnsemblPlantsGene:Bra015600	EnsemblPlants:Bra015600.1
EnsemblPlants:Bra015600.1-P	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	InterPro:Longin-like_dom_sf	UniProt:M4DGH6	PFAM:PF01217	PIRSF:PIRSF015588	PANTHER:PTHR11753
PANTHER:PTHR11753:SF17	SUPFAM:SSF64356	UniParc:UPI0002544BBE	:	:	:

Description

AT1G47830 (E=6e-076) | clathrin coat assembly protein, putative

Coordinates

chrA10:-:706654..707641

Molecular Weight (calculated)

18717.0 Da

IEP (calculated)

7.112

GRAVY (calculated)

0.055

Length

157 amino acids

Sequence
(BLAST)

001: MILKICGIVR IPPLSKIRFI LLQNRQGKTR LAKYYVPLEE SEKHKVEYEV HRLVVNRDAK FTNFVEFRTH KVIYRRYAGL FFSVCVDITD NELAYLECIH
101: LFVEILDHFF SNVCELDLVF NFHKVYLILD EFILAGELQE TSKRAIIERM SELEKLE

Best Arabidopsis Sequence Match ( AT1G47830.1 )
(BLAST)

001: MIRFILLQNR QGKTRLAKYY VPLEESEKHK VEYEVHRLVV NRDAKFTNFV EFRTHKVIYR RYAGLFFSVC VDITDNELAY LESIHLFVEI LDHFFSNVCE
101: LDLVFNFHKV YLILDEFILA GELQETSKRA IIERMSELEK LQ

Arabidopsis Description

AP17AP-2 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:Q84WL9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.