Factsheet for Bra012884.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
plasma membrane 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90681	Canola	cytosol	99.4	99.4
AT3G50860.1	Thale cress	cytosol	95.21	95.78
VIT_04s0023g01770.t01	Wine grape	cytosol, mitochondrion	81.44	82.42
KRH69924	Soybean	cytosol, mitochondrion	78.44	78.92
KRH08275	Soybean	cytosol, mitochondrion	77.25	77.71
Bra036855.1-P	Field mustard	cytosol	41.32	76.67
GSMUA_Achr8P26380_001	Banana	cytosol, mitochondrion	74.25	74.7
Solyc02g085240.2.1	Tomato	cytosol	71.26	71.26
PGSC0003DMT400009269	Potato	cytosol	66.47	68.1
TraesCS4D01G235600.1	Wheat	cytosol	65.87	66.27
TraesCS4B01G234400.1	Wheat	cytosol	65.87	66.27
TraesCS4A01G078400.1	Wheat	cytosol	65.87	66.27
Os03t0228400-01	Rice	cytosol, mitochondrion	64.07	64.46
EER92601	Sorghum	mitochondrion	63.47	63.86
Os01t0353600-00	Rice	mitochondrion	61.68	62.05
Zm00001d004311_P001	Maize	extracellular	28.74	59.26
Zm00001d047992_P006	Maize	cytosol, mitochondrion	62.28	59.09
Zm00001d010247_P001	Maize	extracellular	29.94	46.3
OQU84502	Sorghum	mitochondrion	58.68	46.23
GSMUA_AchrUn_...	Banana	cytosol	44.31	41.11
Bra039020.1-P	Field mustard	mitochondrion	31.74	37.06
Bra027439.1-P	Field mustard	cytosol	34.13	37.01
Bra036702.1-P	Field mustard	mitochondrion	31.14	36.36
Bra015600.1-P	Field mustard	cytosol, mitochondrion	33.53	35.67
Bra002054.1-P	Field mustard	cytosol, mitochondrion	32.93	34.16
Bra011613.1-P	Field mustard	cytosol	31.74	26.11
Zm00001d008712_P001	Maize	extracellular	32.34	24.77
Zm00001d041448_P001	Maize	plastid	34.73	20.42
Zm00001d042538_P001	Maize	plastid	34.73	19.46

Protein Annotations

MapMan:22.1.5.4	Gene3D:3.30.450.60	InterPro:APS3	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su	EnsemblPlantsGene:Bra012884
EnsemblPlants:Bra012884.1	EnsemblPlants:Bra012884.1-P	InterPro:Clathrin_sm-chain_CS	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0008565	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030117	GO:GO:0030123
InterPro:Longin-like_dom_sf	UniProt:M4D8S4	PFAM:PF01217	PIRSF:PIRSF015588	ScanProsite:PS00989	PANTHER:PTHR11753
PANTHER:PTHR11753:SF2	SUPFAM:SSF64356	UniParc:UPI00019AA984	:	:	:

Description

AT3G50860 (E=7e-086) | clathrin adaptor complex small chain family protein

Coordinates

chrA03:+:21743212..21744339

Molecular Weight (calculated)

18883.9 Da

IEP (calculated)

4.711

GRAVY (calculated)

0.073

Length

167 amino acids

Sequence
(BLAST)

001: MIKAVMMMNT QGKPRLAKFY DFLPVEKQQE LIRGVFSVLS SRPENVSNFL EIDSLFGPDS RLVYKHYATL YFVLVFDGSE NELAMLDLIQ VLVETLDKCF
101: SNVCELDIVF NYSKMHTVLD EIVFGGQVLE TRSDEVMKAV EEISKLEAAS NSISLVPKSV SGWRGGR

Best Arabidopsis Sequence Match ( AT3G50860.1 )
(BLAST)

001: MIKAVMMMNT QGKPRLAKFY DYLPVEKQQE LIRGVFSVLC SRPENVSNFL EIESLFGPDS RLVYKHYATL YFVLVFDGSE NELAMLDLIQ VLVETLDKCF
101: SNVCELDIVF NYSKMHAVLD EIVFGGQVLE TSSAEVMKAV EEISKLEAAS NSISLVPKSV SGWRGR

Arabidopsis Description

AP-3 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.