Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
- plastid 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS4B01G234400.1 | Wheat | cytosol | 98.19 | 98.19 |
TraesCS4A01G078400.1 | Wheat | cytosol | 98.19 | 98.19 |
Os03t0228400-01 | Rice | cytosol, mitochondrion | 89.16 | 89.16 |
EER92601 | Sorghum | mitochondrion | 86.75 | 86.75 |
Os01t0353600-00 | Rice | mitochondrion | 86.14 | 86.14 |
Zm00001d047992_P006 | Maize | cytosol, mitochondrion | 87.35 | 82.39 |
GSMUA_Achr8P26380_001 | Banana | cytosol, mitochondrion | 76.51 | 76.51 |
VIT_04s0023g01770.t01 | Wine grape | cytosol, mitochondrion | 71.08 | 71.52 |
Zm00001d004311_P001 | Maize | extracellular | 33.73 | 69.14 |
KRH08275 | Soybean | cytosol, mitochondrion | 66.87 | 66.87 |
Bra012884.1-P | Field mustard | cytosol | 66.27 | 65.87 |
CDX90681 | Canola | cytosol | 65.66 | 65.27 |
OQU84502 | Sorghum | mitochondrion | 83.13 | 65.09 |
KRH69924 | Soybean | cytosol, mitochondrion | 65.06 | 65.06 |
AT3G50860.1 | Thale cress | cytosol | 65.06 | 65.06 |
Solyc02g085240.2.1 | Tomato | cytosol | 65.06 | 64.67 |
PGSC0003DMT400009269 | Potato | cytosol | 60.84 | 61.96 |
Solyc01g109640.2.1 | Tomato | cytosol | 58.43 | 58.79 |
Zm00001d010247_P001 | Maize | extracellular | 36.75 | 56.48 |
CDY28984 | Canola | cytosol | 66.87 | 52.61 |
Bra036855.1-P | Field mustard | cytosol | 27.11 | 50.0 |
PGSC0003DMT400001875 | Potato | cytosol | 46.99 | 46.43 |
GSMUA_AchrUn_... | Banana | cytosol | 48.19 | 44.44 |
CDX73778 | Canola | cytosol, endoplasmic reticulum, nucleus | 33.73 | 39.44 |
TraesCS5D01G119700.1 | Wheat | mitochondrion | 33.13 | 38.73 |
TraesCS5D01G430000.1 | Wheat | cytosol, mitochondrion | 34.34 | 35.4 |
TraesCS6D01G101600.1 | Wheat | cytosol, mitochondrion | 28.92 | 33.57 |
Zm00001d008712_P001 | Maize | extracellular | 40.96 | 31.19 |
Zm00001d041448_P001 | Maize | plastid | 43.37 | 25.35 |
Zm00001d042538_P001 | Maize | plastid | 43.37 | 24.16 |
Protein Annotations
MapMan:22.1.5.4 | Gene3D:3.30.450.60 | InterPro:APS3 | InterPro:AP_complex_ssu | InterPro:AP_mu_sigma_su | InterPro:Clathrin_sm-chain_CS |
ncoils:Coil | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0005737 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0008565 | GO:GO:0015031 |
GO:GO:0016020 | GO:GO:0016192 | GO:GO:0030117 | GO:GO:0030123 | InterPro:Longin-like_dom_sf | PFAM:PF01217 |
PIRSF:PIRSF015588 | ScanProsite:PS00989 | PANTHER:PTHR11753 | PANTHER:PTHR11753:SF2 | SUPFAM:SSF64356 | EnsemblPlantsGene:TraesCS4D01G235600 |
EnsemblPlants:TraesCS4D01G235600.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4D:+:396740666..396743345
Molecular Weight (calculated)
18942.0 Da
IEP (calculated)
5.029
GRAVY (calculated)
0.086
Length
166 amino acids
Sequence
(BLAST)
(BLAST)
001: MIQAVMVIST LGKPRLLKFY DFQDPEKHQE LVRGVFQLLS ARPEGVSNFV EADAIFGPGT RLVYKHLATL YFIFVFDSSE NELAMLDLVQ VFVETLNRCF
101: KNVCELDIVF NFNKLHTVLD EMILGGQVIE TSSEQIMKSV EEIARLEKQS STTSLIPKSI SERFSR
101: KNVCELDIVF NFNKLHTVLD EMILGGQVIE TSSEQIMKSV EEIARLEKQS STTSLIPKSI SERFSR
001: MIKAVMMMNT QGKPRLAKFY DYLPVEKQQE LIRGVFSVLC SRPENVSNFL EIESLFGPDS RLVYKHYATL YFVLVFDGSE NELAMLDLIQ VLVETLDKCF
101: SNVCELDIVF NYSKMHAVLD EIVFGGQVLE TSSAEVMKAV EEISKLEAAS NSISLVPKSV SGWRGR
101: SNVCELDIVF NYSKMHAVLD EIVFGGQVLE TSSAEVMKAV EEISKLEAAS NSISLVPKSV SGWRGR
Arabidopsis Description
AP-3 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ37]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.