CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
cytosol 3
plasma membrane 1
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69924	Soybean	cytosol, mitochondrion	95.18	95.18
VIT_04s0023g01770.t01	Wine grape	cytosol, mitochondrion	78.92	79.39
AT3G50860.1	Thale cress	cytosol	78.92	78.92
Bra012884.1-P	Field mustard	cytosol	77.71	77.25
CDX90681	Canola	cytosol	77.11	76.65
GSMUA_Achr8P26380_001	Banana	cytosol, mitochondrion	72.29	72.29
Solyc02g085240.2.1	Tomato	cytosol	72.29	71.86
Bra036855.1-P	Field mustard	cytosol	37.35	68.89
PGSC0003DMT400009269	Potato	cytosol	67.47	68.71
TraesCS4D01G235600.1	Wheat	cytosol	66.87	66.87
TraesCS4B01G234400.1	Wheat	cytosol	66.87	66.87
TraesCS4A01G078400.1	Wheat	cytosol	66.87	66.87
EER92601	Sorghum	mitochondrion	64.46	64.46
Os03t0228400-01	Rice	cytosol, mitochondrion	64.46	64.46
Os01t0353600-00	Rice	mitochondrion	62.05	62.05
Zm00001d004311_P001	Maize	extracellular	30.12	61.73
CDY28984	Canola	cytosol	77.11	60.66
Zm00001d047992_P006	Maize	cytosol, mitochondrion	62.65	59.09
CDX73778	Canola	cytosol, endoplasmic reticulum, nucleus	45.18	52.82
Zm00001d010247_P001	Maize	extracellular	31.33	48.15
OQU84502	Sorghum	mitochondrion	60.84	47.64
KRH17427	Soybean	mitochondrion	34.94	40.85
KRH05944	Soybean	mitochondrion	34.94	40.85
GSMUA_AchrUn_...	Banana	cytosol	42.17	38.89
KRG90038	Soybean	cytosol, mitochondrion	35.54	36.65
KRH17634	Soybean	endoplasmic reticulum	34.94	36.02
KRH73467	Soybean	cytosol, mitochondrion	36.75	35.88
KRH74193	Soybean	mitochondrion	29.52	34.27
KRH49010	Soybean	mitochondrion	29.52	34.27
KRH60179	Soybean	cytosol	16.87	31.11
Zm00001d008712_P001	Maize	extracellular	33.73	25.69
Zm00001d041448_P001	Maize	plastid	36.14	21.13
Zm00001d042538_P001	Maize	plastid	36.14	20.13

Protein Annotations

EntrezGene:100781795	MapMan:22.1.5.4	Gene3D:3.30.450.60	UniProt:A0A0R4J5K6	EMBL:ACUP02010156	InterPro:APS3
InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su	InterPro:Clathrin_sm-chain_CS	ncoils:Coil	EnsemblPlantsGene:GLYMA_16G139700	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192
GO:GO:0030117	GO:GO:0030123	EnsemblPlants:KRH08275	ProteinID:KRH08275	ProteinID:KRH08275.1	InterPro:Longin-like_dom_sf
PFAM:PF01217	PIRSF:PIRSF015588	ScanProsite:PS00989	PANTHER:PTHR11753	PANTHER:PTHR11753:SF2	SUPFAM:SSF64356
UniParc:UPI0001E7A3E4	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:-:29705320..29710788

Molecular Weight (calculated)

19055.0 Da

IEP (calculated)

5.280

GRAVY (calculated)

0.054

Length

166 amino acids

Sequence
(BLAST)

001: MIKAVLVLNT EGKPRLAKFY QFQSVEKQHE AIRNVFSVLC CRPEHVSNFV DAESFFGPDS RLVYKHFATL YFMFIFDSSE NELAMLDLIQ VFVETLDKCF
101: RNVCELDIVF NYSKMHTILD EIILGGQVLE TSSNEVMKAI EEISRLESAS NAINLVPKSV SGWRSR

Best Arabidopsis Sequence Match ( AT3G50860.1 )
(BLAST)

001: MIKAVMMMNT QGKPRLAKFY DYLPVEKQQE LIRGVFSVLC SRPENVSNFL EIESLFGPDS RLVYKHYATL YFVLVFDGSE NELAMLDLIQ VLVETLDKCF
101: SNVCELDIVF NYSKMHAVLD EIVFGGQVLE TSSAEVMKAV EEISKLEAAS NSISLVPKSV SGWRGR

Arabidopsis Description

AP-3 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.