CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 3
plasma membrane 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047992_P006	Maize	cytosol, mitochondrion	95.78	90.34
Os03t0228400-01	Rice	cytosol, mitochondrion	89.76	89.76
TraesCS4A01G078400.1	Wheat	cytosol	87.35	87.35
TraesCS4D01G235600.1	Wheat	cytosol	86.75	86.75
TraesCS4B01G234400.1	Wheat	cytosol	86.75	86.75
Os01t0353600-00	Rice	mitochondrion	84.94	84.94
GSMUA_Achr8P26380_001	Banana	cytosol, mitochondrion	76.51	76.51
OQU84502	Sorghum	mitochondrion	92.77	72.64
VIT_04s0023g01770.t01	Wine grape	cytosol, mitochondrion	69.28	69.7
Solyc02g085240.2.1	Tomato	cytosol	65.66	65.27
KRH69924	Soybean	cytosol, mitochondrion	65.06	65.06
KRH08275	Soybean	cytosol, mitochondrion	64.46	64.46
Bra012884.1-P	Field mustard	cytosol	63.86	63.47
PGSC0003DMT400009269	Potato	cytosol	62.05	63.19
CDX90681	Canola	cytosol	63.25	62.87
AT3G50860.1	Thale cress	cytosol	62.65	62.65
Solyc01g109640.2.1	Tomato	cytosol	59.64	60.0
CDY28984	Canola	cytosol	64.46	50.71
Bra036855.1-P	Field mustard	cytosol	26.51	48.89
PGSC0003DMT400001875	Potato	cytosol	46.99	46.43
GSMUA_AchrUn_...	Banana	cytosol	47.59	43.89
EES16862	Sorghum	cytosol	36.75	42.96
EES08264	Sorghum	mitochondrion	36.75	42.96
CDX73778	Canola	cytosol, endoplasmic reticulum, nucleus	32.53	38.03
KXG25094	Sorghum	cytosol, mitochondrion	30.72	35.66
EER93221	Sorghum	mitochondrion	33.73	34.78
KXG37427	Sorghum	cytosol, nucleus, plastid	34.94	21.64

Protein Annotations

MapMan:22.1.5.4	Gene3D:3.30.450.60	EntrezGene:8085244	InterPro:APS3	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su
UniProt:C5WRQ2	InterPro:Clathrin_sm-chain_CS	ncoils:Coil	EnsemblPlants:EER92601	ProteinID:EER92601	ProteinID:EER92601.1
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	GO:GO:0030117	GO:GO:0030123	InterPro:Longin-like_dom_sf	PFAM:PF01217	PIRSF:PIRSF015588
ScanProsite:PS00989	PANTHER:PTHR11753	PANTHER:PTHR11753:SF2	EnsemblPlantsGene:SORBI_3001G446200	SUPFAM:SSF64356	UniParc:UPI0001A8279D
RefSeq:XP_002465603.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:72291290..72294552

Molecular Weight (calculated)

19124.3 Da

IEP (calculated)

5.720

GRAVY (calculated)

0.019

Length

166 amino acids

Sequence
(BLAST)

001: MIQAVMVIST QAKPRLLKFY NFQPPEKHQD LVRSVFQLLS ARPDSVSNFV KVDSIFGPGT KMVYKHLATL YFVFVFDSSE NELAMLDLIQ VFVETLDKCF
101: KNVCELDIVF NFNKLHTILD EMILGGQVIE TSSEQIMKSV EEIERLEKQS STTSFIPKSI TERFTR

Best Arabidopsis Sequence Match ( AT3G50860.1 )
(BLAST)

001: MIKAVMMMNT QGKPRLAKFY DYLPVEKQQE LIRGVFSVLC SRPENVSNFL EIESLFGPDS RLVYKHYATL YFVLVFDGSE NELAMLDLIQ VLVETLDKCF
101: SNVCELDIVF NYSKMHAVLD EIVFGGQVLE TSSAEVMKAV EEISKLEAAS NSISLVPKSV SGWRGR

Arabidopsis Description

AP-3 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.