CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92601	Sorghum	mitochondrion	72.64	92.77
Zm00001d047992_P006	Maize	cytosol, mitochondrion	76.42	92.05
Os03t0228400-01	Rice	cytosol, mitochondrion	67.45	86.14
TraesCS4B01G234400.1	Wheat	cytosol	65.57	83.73
TraesCS4D01G235600.1	Wheat	cytosol	65.09	83.13
TraesCS4A01G078400.1	Wheat	cytosol	65.09	83.13
Os01t0353600-00	Rice	mitochondrion	63.68	81.33
GSMUA_Achr8P26380_001	Banana	cytosol, mitochondrion	56.6	72.29
VIT_04s0023g01770.t01	Wine grape	cytosol, mitochondrion	50.94	65.45
Solyc02g085240.2.1	Tomato	cytosol	48.58	61.68
KRH69924	Soybean	cytosol, mitochondrion	48.11	61.45
KRH08275	Soybean	cytosol, mitochondrion	47.64	60.84
PGSC0003DMT400009269	Potato	cytosol	46.23	60.12
Solyc01g109640.2.1	Tomato	cytosol	45.75	58.79
Bra012884.1-P	Field mustard	cytosol	46.23	58.68
CDX90681	Canola	cytosol	45.75	58.08
AT3G50860.1	Thale cress	cytosol	45.28	57.83
PGSC0003DMT400001875	Potato	cytosol	37.26	47.02
CDY28984	Canola	cytosol	46.7	46.92
Bra036855.1-P	Field mustard	cytosol	19.81	46.67
EES16862	Sorghum	cytosol	27.36	40.85
EES08264	Sorghum	mitochondrion	27.36	40.85
GSMUA_AchrUn_...	Banana	cytosol	34.43	40.56
CDX73778	Canola	cytosol, endoplasmic reticulum, nucleus	23.58	35.21
KXG25094	Sorghum	cytosol, mitochondrion	23.58	34.97
EER93221	Sorghum	mitochondrion	25.47	33.54
KXG37427	Sorghum	cytosol, nucleus, plastid	26.89	21.27

Protein Annotations

MapMan:22.1.5.4	UniProt:A0A1Z5RL80	InterPro:APS3	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su	InterPro:Clathrin_sm-chain_CS
ncoils:Coil	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031
GO:GO:0016020	GO:GO:0016192	GO:GO:0030117	GO:GO:0030123	InterPro:Longin-like_dom_sf	EnsemblPlants:OQU84502
ProteinID:OQU84502	ProteinID:OQU84502.1	PFAM:PF01217	PIRSF:PIRSF015588	ScanProsite:PS00989	PANTHER:PTHR11753
PANTHER:PTHR11753:SF2	EnsemblPlantsGene:SORBI_3004G067300	SUPFAM:SSF64356	UniParc:UPI000B8BAA59	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:+:5487373..5494686

Molecular Weight (calculated)

24028.2 Da

IEP (calculated)

6.114

GRAVY (calculated)

0.058

Length

212 amino acids

Sequence
(BLAST)

001: MIQVVMVIST QVKPRLLKFY SFQVPNPLLS SIQAPPSPLS FFNTQQVLGQ FPHPDQPLAP EKHQDLVRSV FQLLSARPNS VSSFVKVDSV FGPGTKMVYK
101: HLATLYFVFI FDSSENELAM LDLLQVFVET LDRCFKNVCE LDDVCNFNKL HTILDEMILG GQVIETSSEQ IVKSVEEIER LEKQSSTTSF IPKSITERFT
201: RKLSLISLTP NI

Best Arabidopsis Sequence Match ( AT3G50860.1 )
(BLAST)

001: MIKAVMMMNT QGKPRLAKFY DYLPVEKQQE LIRGVFSVLC SRPENVSNFL EIESLFGPDS RLVYKHYATL YFVLVFDGSE NELAMLDLIQ VLVETLDKCF
101: SNVCELDIVF NYSKMHAVLD EIVFGGQVLE TSSAEVMKAV EEISKLEAAS NSISLVPKSV SGWRGR

Arabidopsis Description

AP-3 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.