Factsheet for GSMUA_Achr8P26380_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
cytosol 3
plasma membrane 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0023g01770.t01	Wine grape	cytosol, mitochondrion	78.31	78.79
TraesCS4B01G234400.1	Wheat	cytosol	77.11	77.11
TraesCS4D01G235600.1	Wheat	cytosol	76.51	76.51
EER92601	Sorghum	mitochondrion	76.51	76.51
TraesCS4A01G078400.1	Wheat	cytosol	76.51	76.51
Os03t0228400-01	Rice	cytosol, mitochondrion	75.3	75.3
Bra012884.1-P	Field mustard	cytosol	74.7	74.25
CDX90681	Canola	cytosol	74.1	73.65
AT3G50860.1	Thale cress	cytosol	73.49	73.49
KRH69924	Soybean	cytosol, mitochondrion	73.49	73.49
KRH08275	Soybean	cytosol, mitochondrion	72.29	72.29
Os01t0353600-00	Rice	mitochondrion	71.69	71.69
Zm00001d047992_P006	Maize	cytosol, mitochondrion	74.7	70.45
Solyc02g085240.2.1	Tomato	cytosol	69.88	69.46
Zm00001d004311_P001	Maize	extracellular	33.73	69.14
PGSC0003DMT400009269	Potato	cytosol	66.87	68.1
Solyc01g109640.2.1	Tomato	cytosol	63.86	64.24
Bra036855.1-P	Field mustard	cytosol	33.73	62.22
CDY28984	Canola	cytosol	74.1	58.29
OQU84502	Sorghum	mitochondrion	72.29	56.6
Zm00001d010247_P001	Maize	extracellular	36.14	55.56
PGSC0003DMT400001875	Potato	cytosol	51.2	50.6
GSMUA_AchrUn_...	Banana	cytosol	54.22	50.0
CDX73778	Canola	cytosol, endoplasmic reticulum, nucleus	40.96	47.89
GSMUA_Achr4P10500_001	Banana	mitochondrion	31.93	36.81
GSMUA_Achr8P19280_001	Banana	cytosol	34.34	33.73
Zm00001d008712_P001	Maize	extracellular	40.96	31.19
GSMUA_Achr8P15550_001	Banana	cytosol, mitochondrion	34.34	29.08
GSMUA_Achr3P24130_001	Banana	cytosol, mitochondrion	34.94	27.62
Zm00001d041448_P001	Maize	plastid	43.37	25.35
Zm00001d042538_P001	Maize	plastid	43.98	24.5
GSMUA_Achr9P11170_001	Banana	extracellular	34.94	21.32

Protein Annotations

MapMan:22.1.5.4	Gene3D:3.30.450.60	InterPro:APS3	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su	InterPro:Clathrin_sm-chain_CS
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	GO:GO:0030117	GO:GO:0030123	EnsemblPlantsGene:GSMUA_Achr8G26380_001	EnsemblPlants:GSMUA_Achr8P26380_001	EnsemblPlants:GSMUA_Achr8T26380_001
InterPro:Longin-like_dom_sf	UniProt:M0TTU1	PFAM:PF01217	PIRSF:PIRSF015588	ScanProsite:PS00989	PANTHER:PTHR11753
PANTHER:PTHR11753:SF2	SUPFAM:SSF64356	UniParc:UPI0002963C02	SEG:seg	:	:

Description

AP-3 complex subunit sigma [Source:GMGC_GENE;Acc:GSMUA_Achr8G26380_001]

Coordinates

chr8:+:29971477..29974110

Molecular Weight (calculated)

18871.9 Da

IEP (calculated)

6.265

GRAVY (calculated)

0.083

Length

166 amino acids

Sequence
(BLAST)

001: MIRAVIVMNT QGKPRLLKFY EFQPPEKQHE LTRSVFAVLS GRPDNVSNFV EADAIFGPGT RLVYKHLATL YFVFVFDSCE NELAMLDLIQ VLVETLDRCF
101: KNVCELDIVF NFNKMHTILD EIIFGGQVLE TSSERVLKAV EEISRLEKSS SSVSFVPKSV SGRFGR

Best Arabidopsis Sequence Match ( AT3G50860.1 )
(BLAST)

001: MIKAVMMMNT QGKPRLAKFY DYLPVEKQQE LIRGVFSVLC SRPENVSNFL EIESLFGPDS RLVYKHYATL YFVLVFDGSE NELAMLDLIQ VLVETLDKCF
101: SNVCELDIVF NYSKMHAVLD EIVFGGQVLE TSSAEVMKAV EEISKLEAAS NSISLVPKSV SGWRGR

Arabidopsis Description

AP-3 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.