Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 3
- plasma membrane 1
- golgi 1
- mitochondrion 3
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS5D01G430000.1 | Wheat | cytosol, mitochondrion | 70.95 | 92.55 |
TraesCS5B01G423600.1 | Wheat | cytosol, mitochondrion | 70.95 | 92.55 |
Solyc11g005220.1.1 | Tomato | nucleus | 70.95 | 92.55 |
Os03t0783700-00 | Rice | plasma membrane | 70.95 | 92.55 |
PGSC0003DMT400015461 | Potato | cytosol, mitochondrion | 70.48 | 91.93 |
KRH17634 | Soybean | endoplasmic reticulum | 69.05 | 90.06 |
KRG90038 | Soybean | cytosol, mitochondrion | 69.05 | 90.06 |
Bra002054.1-P | Field mustard | cytosol, mitochondrion | 67.62 | 88.2 |
AT2G17380.1 | Thale cress | cytosol, mitochondrion | 67.14 | 87.58 |
AT4G35410.2 | Thale cress | mitochondrion | 67.14 | 87.04 |
VIT_01s0127g00810.t01 | Wine grape | golgi | 71.9 | 84.83 |
VIT_16s0050g00660.t01 | Wine grape | golgi | 70.95 | 84.18 |
HORVU5Hr1G102930.4 | Barley | extracellular, golgi | 71.9 | 83.89 |
HORVU5Hr1G102770.1 | Barley | extracellular, golgi | 71.9 | 83.89 |
CDY69066 | Canola | cytosol | 68.1 | 80.79 |
Zm00001d013128_P004 | Maize | cytosol, plastid | 70.0 | 77.78 |
PGSC0003DMT400015459 | Potato | cytosol | 52.86 | 77.62 |
KRH73467 | Soybean | cytosol, mitochondrion | 61.43 | 75.88 |
CDX69137 | Canola | extracellular | 66.19 | 75.14 |
GSMUA_Achr8P15550_001 | Banana | cytosol, mitochondrion | 69.05 | 73.98 |
CDX75500 | Canola | cytosol | 67.14 | 69.46 |
Bra011613.1-P | Field mustard | cytosol | 67.14 | 69.46 |
CDY50208 | Canola | extracellular, plasma membrane | 70.0 | 68.37 |
KXG37427 | Sorghum | cytosol, nucleus, plastid | 76.19 | 59.7 |
GSMUA_Achr9P11170_001 | Banana | extracellular | 71.43 | 55.15 |
Zm00001d034337_P005 | Maize | cytosol | 76.67 | 51.27 |
GSMUA_Achr8P19280_001 | Banana | cytosol | 36.67 | 45.56 |
GSMUA_Achr4P10500_001 | Banana | mitochondrion | 30.95 | 45.14 |
GSMUA_Achr8P26380_001 | Banana | cytosol, mitochondrion | 27.62 | 34.94 |
GSMUA_AchrUn_... | Banana | cytosol | 18.1 | 21.11 |
Protein Annotations
MapMan:22.1.2.4 | Gene3D:3.30.450.60 | InterPro:AP_complex_ssu | InterPro:AP_mu_sigma_su | InterPro:Clathrin_sm-chain_CS | GO:GO:0003674 |
GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 |
GO:GO:0006886 | GO:GO:0008150 | GO:GO:0008565 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016192 |
GO:GO:0030117 | EnsemblPlantsGene:GSMUA_Achr3G24130_001 | EnsemblPlants:GSMUA_Achr3P24130_001 | EnsemblPlants:GSMUA_Achr3T24130_001 | InterPro:Longin-like_dom_sf | UniProt:M0SHC9 |
PFAM:PF01217 | PIRSF:PIRSF015588 | ScanProsite:PS00989 | PANTHER:PTHR11753 | PANTHER:PTHR11753:SF32 | SUPFAM:SSF64356 |
UniParc:UPI0002956367 | SEG:seg | : | : | : | : |
Description
AP-1 complex subunit sigma-1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G24130_001]
Coordinates
chr3:+:24766301..24774661
Molecular Weight (calculated)
24203.7 Da
IEP (calculated)
8.565
GRAVY (calculated)
0.017
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MCWIALSNCA HFAFKKMGRL LATRGKVFPL RLLPSVLEAA QEEEGRGREM IHFVLLISRQ GKVRLTKWYS PYSQKERTKV IRELSGLILA RGPKLCNFVE
101: WRGYKVVYRR YASLYFCMCI DADDNELEIL EIIHHFVEIL DRYFGSVCEL DLIFNFHKAY YILDEILIAG ELQESSKKTV ARLIAAQDSL VEAAKEQASS
201: VSNMIAQVTK
101: WRGYKVVYRR YASLYFCMCI DADDNELEIL EIIHHFVEIL DRYFGSVCEL DLIFNFHKAY YILDEILIAG ELQESSKKTV ARLIAAQDSL VEAAKEQASS
201: VSNMIAQVTK
001: MIHFVLLVSR QGKVRLTKWY SPYTQKERSK VIRELSGVIL NRGPKLCNFI EWRGYKVVYK RYASLYFCMC IDEADNELEV LEIIHHYVEI LDRYFGSVCE
101: LDLIFNFHKA YYILDELLIA GELQESSKKT VARIISAQDQ LVEVAKEEAS SISNIIAQAT K
101: LDLIFNFHKA YYILDELLIA GELQESSKKT VARIISAQDQ LVEVAKEEAS SISNIIAQAT K
Arabidopsis Description
AAP19-1AP-1 complex subunit sigma-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LEZ8]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.