Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- mitochondrion 4
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0703600-01 | |
| Os05t0543100-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G17380.1 | Os01t0703600-01 | AT1G60780.1 | 23543752 |
| AT2G17380.1 | Os05t0543100-01 | AT1G60780.1 | 23543752 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G430000.1 | Wheat | cytosol, mitochondrion | 96.27 | 96.27 |
| TraesCS5B01G423600.1 | Wheat | cytosol, mitochondrion | 96.27 | 96.27 |
| Solyc11g005220.1.1 | Tomato | nucleus | 93.17 | 93.17 |
| PGSC0003DMT400015461 | Potato | cytosol, mitochondrion | 93.17 | 93.17 |
| KRG90038 | Soybean | cytosol, mitochondrion | 90.06 | 90.06 |
| KRH17634 | Soybean | endoplasmic reticulum | 90.06 | 90.06 |
| Bra002054.1-P | Field mustard | cytosol, mitochondrion | 89.44 | 89.44 |
| AT2G17380.1 | Thale cress | cytosol, mitochondrion | 88.82 | 88.82 |
| AT4G35410.2 | Thale cress | mitochondrion | 88.82 | 88.27 |
| HORVU5Hr1G102770.1 | Barley | extracellular, golgi | 95.65 | 85.56 |
| HORVU5Hr1G102930.4 | Barley | extracellular, golgi | 95.65 | 85.56 |
| VIT_16s0050g00660.t01 | Wine grape | golgi | 92.55 | 84.18 |
| VIT_01s0127g00810.t01 | Wine grape | golgi | 92.55 | 83.71 |
| CDY69066 | Canola | cytosol | 89.44 | 81.36 |
| Zm00001d013128_P004 | Maize | cytosol, plastid | 94.41 | 80.42 |
| KRH73467 | Soybean | cytosol, mitochondrion | 80.12 | 75.88 |
| PGSC0003DMT400015459 | Potato | cytosol | 67.08 | 75.52 |
| CDX69137 | Canola | extracellular | 86.34 | 75.14 |
| GSMUA_Achr8P15550_001 | Banana | cytosol, mitochondrion | 88.2 | 72.45 |
| GSMUA_Achr3P24130_001 | Banana | cytosol, mitochondrion | 92.55 | 70.95 |
| CDX75500 | Canola | cytosol | 86.96 | 68.97 |
| Bra011613.1-P | Field mustard | cytosol | 86.96 | 68.97 |
| CDY50208 | Canola | extracellular, plasma membrane | 88.82 | 66.51 |
| KXG37427 | Sorghum | cytosol, nucleus, plastid | 98.14 | 58.96 |
| Os12t0207300-01 | Rice | plasma membrane | 47.83 | 54.23 |
| GSMUA_Achr9P11170_001 | Banana | extracellular | 89.44 | 52.94 |
| Zm00001d034337_P005 | Maize | cytosol | 98.76 | 50.64 |
| Os08t0395300-01 | Rice | cytosol, mitochondrion | 37.27 | 41.96 |
| Os10t0368400-01 | Rice | cytosol, mitochondrion | 35.4 | 39.86 |
| Os03t0228400-01 | Rice | cytosol, mitochondrion | 37.89 | 36.75 |
| Os01t0353600-00 | Rice | mitochondrion | 36.02 | 34.94 |
Protein Annotations
| MapMan:22.1.2.4 | Gene3D:3.30.450.60 | EntrezGene:4334331 | ProteinID:ABF99209.1 | InterPro:AP_complex_ssu | InterPro:AP_mu_sigma_su |
| ProteinID:BAS86702.1 | InterPro:Clathrin_sm-chain_CS | ncoils:Coil | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 |
| GO:GO:0008565 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | GO:GO:0030117 |
| InterPro:Longin-like_dom_sf | EnsemblPlantsGene:Os03g0783700 | EnsemblPlants:Os03t0783700-00 | PFAM:PF01217 | PIRSF:PIRSF015588 | ScanProsite:PS00989 |
| PANTHER:PTHR11753 | PANTHER:PTHR11753:SF32 | UniProt:Q10CG6 | SUPFAM:SSF64356 | UniParc:UPI0000DB4765 | RefSeq:XP_015628195.1 |
Description
Similar to AP-1 complex subunit sigma-2. (Os03t0783700-00)
Coordinates
chr3:-:32513510..32515995
Molecular Weight (calculated)
18649.7 Da
IEP (calculated)
7.379
GRAVY (calculated)
0.006
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MINFVLLISR QGKVRLTKWY SPYTQKERTK VIRELSGLIL TRGPKLCNFV EWKGYKVVYR RYASLYFCMC IDAEDNELEV LEIIHHFVEV LDRYFGSVCE
101: LDLIFNFHKA YYILDEILIA GELQESSKKN VARLIAAQDS LVEAAKEEAS SISNIIAQAT K
101: LDLIFNFHKA YYILDEILIA GELQESSKKN VARLIAAQDS LVEAAKEEAS SISNIIAQAT K
001: MIHFVLLVSR QGKVRLTKWY SPYTQKERSK VIRELSGVIL NRGPKLCNFI EWRGYKVVYK RYASLYFCMC IDEADNELEV LEIIHHYVEI LDRYFGSVCE
101: LDLIFNFHKA YYILDELLIA GELQESSKKT VARIISAQDQ LVEVAKEEAS SISNIIAQAT K
101: LDLIFNFHKA YYILDELLIA GELQESSKKT VARIISAQDQ LVEVAKEEAS SISNIIAQAT K
Arabidopsis Description
AAP19-1AP-1 complex subunit sigma-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LEZ8]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.