CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY46183
CDY63680
CDY63681

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17380.1	CDY46183	AT1G60780.1	23543752
AT2G17380.1	CDY63680	AT1G60780.1	23543752
AT2G17380.1	CDY63681	AT1G60780.1	23543752

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002054.1-P	Field mustard	cytosol, mitochondrion	90.96	100.0
AT2G17380.1	Thale cress	cytosol, mitochondrion	90.4	99.38
Os03t0783700-00	Rice	plasma membrane	81.36	89.44
TraesCS5D01G430000.1	Wheat	cytosol, mitochondrion	80.79	88.82
TraesCS5B01G423600.1	Wheat	cytosol, mitochondrion	80.79	88.82
KRH17634	Soybean	endoplasmic reticulum	80.23	88.2
KRG90038	Soybean	cytosol, mitochondrion	80.23	88.2
CDX69137	Canola	extracellular	86.44	82.7
HORVU5Hr1G102930.4	Barley	extracellular, golgi	81.36	80.0
HORVU5Hr1G102770.1	Barley	extracellular, golgi	81.36	80.0
CDY50208	Canola	extracellular, plasma membrane	90.96	74.88
CDX75500	Canola	cytosol	85.88	74.88
Zm00001d013128_P004	Maize	cytosol, plastid	79.66	74.6
GSMUA_Achr8P15550_001	Banana	cytosol, mitochondrion	76.84	69.39
GSMUA_Achr3P24130_001	Banana	cytosol, mitochondrion	80.79	68.1
KXG37427	Sorghum	cytosol, nucleus, plastid	82.49	54.48
GSMUA_Achr9P11170_001	Banana	extracellular	78.53	51.1
CDY63352	Canola	cytosol, mitochondrion	41.81	51.03
CDY70589	Canola	cytosol	34.46	50.83
CDX71554	Canola	cytosol	32.77	48.33
CDY52072	Canola	cytosol	41.81	48.05
CDY06725	Canola	cytosol	41.81	47.13
Zm00001d034337_P005	Maize	cytosol	83.62	47.13
CDY35888	Canola	mitochondrion	32.77	40.28
CDX82722	Canola	mitochondrion	32.77	40.28
CDY48729	Canola	mitochondrion	32.2	39.86
CDY03335	Canola	mitochondrion	32.2	39.86
CDX90681	Canola	cytosol	30.51	32.34
CDY28984	Canola	cytosol	30.51	25.59
CDX73778	Canola	cytosol, endoplasmic reticulum, nucleus	19.21	23.94

Protein Annotations

MapMan:22.1.2.4	Gene3D:3.30.450.60	GO:A0A078JTW8	UniProt:A0A078JTW8	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su
EnsemblPlants:CDY69066	ProteinID:CDY69066	ProteinID:CDY69066.1	InterPro:Clathrin_sm-chain_CS	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030117
EnsemblPlantsGene:GSBRNA2T00082632001	InterPro:Longin-like_dom_sf	PFAM:PF01217	PIRSF:PIRSF015588	ScanProsite:PS00989	PANTHER:PTHR11753
PANTHER:PTHR11753:SF32	SUPFAM:SSF64356	UniParc:UPI0004EE5AD6	:	:	:

Description

BnaA07g36290DBnaA07g36290D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JTW8]

Coordinates

chrLK038562:-:2356..4315

Molecular Weight (calculated)

20592.7 Da

IEP (calculated)

6.355

GRAVY (calculated)

-0.147

Length

177 amino acids

Sequence
(BLAST)

001: GTDDHSSDLF WESRINMIHF VLLVSRQGKV RLTKWYSPYT QKERSKVIRE LSGVILNRGP KLCNFIEWRG YKVVYKRYAS LYFCMCIDEA DNELEVLEII
101: HHYVEILDRY FGSVCELDLI FNFHKAYYIL DELLIAGELQ ESSKKTVARI ISAQDQLVEA AKEEASSISN IIAQATK

Best Arabidopsis Sequence Match ( AT2G17380.1 )
(BLAST)

001: MIHFVLLVSR QGKVRLTKWY SPYTQKERSK VIRELSGVIL NRGPKLCNFI EWRGYKVVYK RYASLYFCMC IDEADNELEV LEIIHHYVEI LDRYFGSVCE
101: LDLIFNFHKA YYILDELLIA GELQESSKKT VARIISAQDQ LVEVAKEEAS SISNIIAQAT K

Arabidopsis Description

AAP19-1AP-1 complex subunit sigma-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LEZ8]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.