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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, cytosol

Predictor Summary:
  • plastid 1
  • cytosol 3
  • mitochondrion 4
  • plasma membrane 1
  • nucleus 2
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra031481.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G17380.1 Bra031481.1-P AT1G60780.1 23543752
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT2G17380.1 Thale cress cytosol, mitochondrion 99.38 99.38
CDY69066 Canola cytosol 100.0 90.96
Os03t0783700-00 Rice plasma membrane 89.44 89.44
TraesCS5D01G430000.1 Wheat cytosol, mitochondrion 88.82 88.82
TraesCS5B01G423600.1 Wheat cytosol, mitochondrion 88.82 88.82
KRH17634 Soybean endoplasmic reticulum 88.2 88.2
KRG90038 Soybean cytosol, mitochondrion 88.2 88.2
HORVU5Hr1G102930.4 Barley extracellular, golgi 88.2 78.89
HORVU5Hr1G102770.1 Barley extracellular, golgi 88.2 78.89
Zm00001d013128_P004 Maize cytosol, plastid 87.58 74.6
CDY50208 Canola extracellular, plasma membrane 99.38 74.42
Bra011613.1-P Field mustard cytosol 93.79 74.38
GSMUA_Achr8P15550_001 Banana cytosol, mitochondrion 83.85 68.88
GSMUA_Achr3P24130_001 Banana cytosol, mitochondrion 88.2 67.62
KXG37427 Sorghum cytosol, nucleus, plastid 90.68 54.48
GSMUA_Achr9P11170_001 Banana extracellular 85.09 50.37
Bra027439.1-P Field mustard cytosol 45.96 48.05
Bra015600.1-P Field mustard cytosol, mitochondrion 45.96 47.13
Zm00001d034337_P005 Maize cytosol 90.68 46.5
Bra039020.1-P Field mustard mitochondrion 36.02 40.56
Bra036702.1-P Field mustard mitochondrion 35.4 39.86
Bra012884.1-P Field mustard cytosol 34.16 32.93
Bra036855.1-P Field mustard cytosol 14.29 25.56
Protein Annotations
MapMan:22.1.2.4Gene3D:3.30.450.60InterPro:AP_complex_ssuInterPro:AP_mu_sigma_suEnsemblPlantsGene:Bra002054EnsemblPlants:Bra002054.1
EnsemblPlants:Bra002054.1-PInterPro:Clathrin_sm-chain_CSGO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0006810GO:GO:0006886GO:GO:0008150GO:GO:0008565
GO:GO:0015031GO:GO:0016020GO:GO:0016192GO:GO:0030117InterPro:Longin-like_dom_sfUniProt:M4CCX3
PFAM:PF01217PIRSF:PIRSF015588ScanProsite:PS00989PANTHER:PTHR11753PANTHER:PTHR11753:SF32SUPFAM:SSF64356
UniParc:UPI00019AA983:::::
Description
AT2G17380 (E=2e-088) AP19 | AP19; protein binding / protein transporter
Coordinates
chrA10:-:11906005..11907672
Molecular Weight (calculated)
18731.8 Da
IEP (calculated)
7.445
GRAVY (calculated)
-0.047
Length
161 amino acids
Sequence
(BLAST)
001: MIHFVLLVSR QGKVRLTKWY SPYTQKERSK VIRELSGVIL NRGPKLCNFI EWRGYKVVYK RYASLYFCMC IDEADNELEV LEIIHHYVEI LDRYFGSVCE
101: LDLIFNFHKA YYILDELLIA GELQESSKKT VARIISAQDQ LVEAAKEEAS SISNIIAQAT K
Best Arabidopsis Sequence Match ( AT2G17380.1 )
(BLAST)
001: MIHFVLLVSR QGKVRLTKWY SPYTQKERSK VIRELSGVIL NRGPKLCNFI EWRGYKVVYK RYASLYFCMC IDEADNELEV LEIIHHYVEI LDRYFGSVCE
101: LDLIFNFHKA YYILDELLIA GELQESSKKT VARIISAQDQ LVEVAKEEAS SISNIIAQAT K
Arabidopsis Description
AAP19-1AP-1 complex subunit sigma-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LEZ8]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.