Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 4
- plasma membrane 1
- nucleus 2
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Bra031481.1-P |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT2G17380.1 | Bra031481.1-P | AT1G60780.1 | 23543752 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
AT2G17380.1 | Thale cress | cytosol, mitochondrion | 99.38 | 99.38 |
CDY69066 | Canola | cytosol | 100.0 | 90.96 |
Os03t0783700-00 | Rice | plasma membrane | 89.44 | 89.44 |
TraesCS5D01G430000.1 | Wheat | cytosol, mitochondrion | 88.82 | 88.82 |
TraesCS5B01G423600.1 | Wheat | cytosol, mitochondrion | 88.82 | 88.82 |
KRH17634 | Soybean | endoplasmic reticulum | 88.2 | 88.2 |
KRG90038 | Soybean | cytosol, mitochondrion | 88.2 | 88.2 |
HORVU5Hr1G102930.4 | Barley | extracellular, golgi | 88.2 | 78.89 |
HORVU5Hr1G102770.1 | Barley | extracellular, golgi | 88.2 | 78.89 |
Zm00001d013128_P004 | Maize | cytosol, plastid | 87.58 | 74.6 |
CDY50208 | Canola | extracellular, plasma membrane | 99.38 | 74.42 |
Bra011613.1-P | Field mustard | cytosol | 93.79 | 74.38 |
GSMUA_Achr8P15550_001 | Banana | cytosol, mitochondrion | 83.85 | 68.88 |
GSMUA_Achr3P24130_001 | Banana | cytosol, mitochondrion | 88.2 | 67.62 |
KXG37427 | Sorghum | cytosol, nucleus, plastid | 90.68 | 54.48 |
GSMUA_Achr9P11170_001 | Banana | extracellular | 85.09 | 50.37 |
Bra027439.1-P | Field mustard | cytosol | 45.96 | 48.05 |
Bra015600.1-P | Field mustard | cytosol, mitochondrion | 45.96 | 47.13 |
Zm00001d034337_P005 | Maize | cytosol | 90.68 | 46.5 |
Bra039020.1-P | Field mustard | mitochondrion | 36.02 | 40.56 |
Bra036702.1-P | Field mustard | mitochondrion | 35.4 | 39.86 |
Bra012884.1-P | Field mustard | cytosol | 34.16 | 32.93 |
Bra036855.1-P | Field mustard | cytosol | 14.29 | 25.56 |
Protein Annotations
MapMan:22.1.2.4 | Gene3D:3.30.450.60 | InterPro:AP_complex_ssu | InterPro:AP_mu_sigma_su | EnsemblPlantsGene:Bra002054 | EnsemblPlants:Bra002054.1 |
EnsemblPlants:Bra002054.1-P | InterPro:Clathrin_sm-chain_CS | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 |
GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0008565 |
GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016192 | GO:GO:0030117 | InterPro:Longin-like_dom_sf | UniProt:M4CCX3 |
PFAM:PF01217 | PIRSF:PIRSF015588 | ScanProsite:PS00989 | PANTHER:PTHR11753 | PANTHER:PTHR11753:SF32 | SUPFAM:SSF64356 |
UniParc:UPI00019AA983 | : | : | : | : | : |
Description
AT2G17380 (E=2e-088) AP19 | AP19; protein binding / protein transporter
Coordinates
chrA10:-:11906005..11907672
Molecular Weight (calculated)
18731.8 Da
IEP (calculated)
7.445
GRAVY (calculated)
-0.047
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MIHFVLLVSR QGKVRLTKWY SPYTQKERSK VIRELSGVIL NRGPKLCNFI EWRGYKVVYK RYASLYFCMC IDEADNELEV LEIIHHYVEI LDRYFGSVCE
101: LDLIFNFHKA YYILDELLIA GELQESSKKT VARIISAQDQ LVEAAKEEAS SISNIIAQAT K
101: LDLIFNFHKA YYILDELLIA GELQESSKKT VARIISAQDQ LVEAAKEEAS SISNIIAQAT K
001: MIHFVLLVSR QGKVRLTKWY SPYTQKERSK VIRELSGVIL NRGPKLCNFI EWRGYKVVYK RYASLYFCMC IDEADNELEV LEIIHHYVEI LDRYFGSVCE
101: LDLIFNFHKA YYILDELLIA GELQESSKKT VARIISAQDQ LVEVAKEEAS SISNIIAQAT K
101: LDLIFNFHKA YYILDELLIA GELQESSKKT VARIISAQDQ LVEVAKEEAS SISNIIAQAT K
Arabidopsis Description
AAP19-1AP-1 complex subunit sigma-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LEZ8]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.