Factsheet for GSMUA_Achr9P11170_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 3
cytosol 2
plasma membrane 3
nucleus 1
extracellular 4
endoplasmic reticulum 2
vacuole 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P25430_001
GSMUA_Achr2P06510_001
GSMUA_Achr7P17600_001
GSMUA_Achr8P31910_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17380.1	GSMUA_Achr1P25430_001	AT1G60780.1	23543752
AT2G17380.1	GSMUA_Achr2P06510_001	AT1G60780.1	23543752
AT2G17380.1	GSMUA_Achr7P17600_001	AT1G60780.1	23543752
AT2G17380.1	GSMUA_Achr8P31910_001	AT1G60780.1	23543752

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G430000.1	Wheat	cytosol, mitochondrion	52.94	89.44
TraesCS5B01G423600.1	Wheat	cytosol, mitochondrion	52.94	89.44
Os03t0783700-00	Rice	plasma membrane	52.94	89.44
PGSC0003DMT400015461	Potato	cytosol, mitochondrion	51.84	87.58
Solyc11g005220.1.1	Tomato	nucleus	51.47	86.96
KRH17634	Soybean	endoplasmic reticulum	51.47	86.96
KRG90038	Soybean	cytosol, mitochondrion	51.47	86.96
AT4G35410.2	Thale cress	mitochondrion	50.74	85.19
Bra002054.1-P	Field mustard	cytosol, mitochondrion	50.37	85.09
AT2G17380.1	Thale cress	cytosol, mitochondrion	50.37	85.09
GSMUA_Achr8P15550_001	Banana	cytosol, mitochondrion	59.56	82.65
VIT_16s0050g00660.t01	Wine grape	golgi	53.68	82.49
VIT_01s0127g00810.t01	Wine grape	golgi	52.94	80.9
HORVU5Hr1G102930.4	Barley	extracellular, golgi	52.94	80.0
HORVU5Hr1G102770.1	Barley	extracellular, golgi	52.94	80.0
CDY69066	Canola	cytosol	51.1	78.53
PGSC0003DMT400015459	Potato	cytosol	38.97	74.13
Zm00001d013128_P004	Maize	cytosol, plastid	51.47	74.07
CDX69137	Canola	extracellular	49.63	72.97
KRH73467	Soybean	cytosol, mitochondrion	45.22	72.35
GSMUA_Achr3P24130_001	Banana	cytosol, mitochondrion	55.15	71.43
CDX75500	Canola	cytosol	51.84	69.46
Bra011613.1-P	Field mustard	cytosol	51.84	69.46
CDY50208	Canola	extracellular, plasma membrane	51.1	64.65
KXG37427	Sorghum	cytosol, nucleus, plastid	54.41	55.22
Zm00001d034337_P005	Maize	cytosol	55.88	48.41
GSMUA_Achr8P19280_001	Banana	cytosol	27.57	44.38
GSMUA_Achr4P10500_001	Banana	mitochondrion	22.79	43.06
GSMUA_Achr8P26380_001	Banana	cytosol, mitochondrion	21.32	34.94
GSMUA_AchrUn_...	Banana	cytosol	13.97	21.11

Protein Annotations

MapMan:22.1.2.4	Gene3D:3.30.450.60	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su	InterPro:Clathrin_sm-chain_CS	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192
GO:GO:0030117	EnsemblPlantsGene:GSMUA_Achr9G11170_001	EnsemblPlants:GSMUA_Achr9P11170_001	EnsemblPlants:GSMUA_Achr9T11170_001	InterPro:Longin-like_dom_sf	UniProt:M0TZC6
PFAM:PF01217	ScanProsite:PS00989	PANTHER:PTHR11753	PANTHER:PTHR11753:SF32	SUPFAM:SSF64356	SignalP:SignalP-noTM
UniParc:UPI000295D980	:	:	:	:	:

Description

AP-1 complex subunit sigma-2 [Source:GMGC_GENE;Acc:GSMUA_Achr9G11170_001]

Coordinates

chr9:-:7275341..7279420

Molecular Weight (calculated)

31621.4 Da

IEP (calculated)

8.902

GRAVY (calculated)

-0.112

Length

272 amino acids

Sequence
(BLAST)

001: MNCFLFFFFF TVGDNVMCRA RDQSLNQRLR CMGWRTYPRW QVRRQVSRLD ACVHEKRSAY SYCWAVSLLS VIQITLDPTK KFLAGIEISF EGSDLLAGRA
101: QGKRGERNSR SKMIHFVILI SRQGKVRLTK WYSPYQQKER STVIRELSGL ILSRGPKLCN FVEWKGYKVV YRRYASLYFC MCIDPDDNEL EILEIIHHFV
201: EILDRYFGSV CELDLIFNFH KAYYILDEIL IAGELQESSK KAVARLIAAQ DSLVETAKEE AGSISNMISQ AI

Best Arabidopsis Sequence Match ( AT4G35410.2 )
(BLAST)

001: MIHFVLLVSR QGKVRLTKWY SPYAQKERSK VIRELSGVIL NRGPKLCNFV EWRGYKVVYK RYASLYFCMC IDQEDNELEV LEIIHHYVEI LDRYFGSVCE
101: LDLIFNFHKA YYILDELLIA GELQESSKKT VARIISAQDQ LVEVAKEEAS SISNIIAQAT NR

Arabidopsis Description

AAP19-2AP-1 complex subunit sigma-2 [Source:UniProtKB/Swiss-Prot;Acc:O23685]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.