Factsheet for GSMUA_Achr4P10500_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 3
plasma membrane 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G101600.1	Wheat	cytosol, mitochondrion	93.75	94.41
TraesCS6B01G140700.1	Wheat	cytosol, mitochondrion	93.75	94.41
TraesCS6A01G113800.1	Wheat	cytosol, mitochondrion	93.06	93.71
Os08t0395300-01	Rice	cytosol, mitochondrion	93.06	93.71
KRH74193	Soybean	mitochondrion	93.06	93.71
KRH49010	Soybean	mitochondrion	93.06	93.71
KXG25094	Sorghum	cytosol, mitochondrion	92.36	93.01
Zm00001d050256_P001	Maize	cytosol, mitochondrion	91.67	92.31
Solyc05g026130.2.1	Tomato	plastid	91.67	92.31
PGSC0003DMT400074468	Potato	mitochondrion	91.67	92.31
VIT_11s0016g02840.t01	Wine grape	cytosol, mitochondrion	86.81	91.91
Bra039020.1-P	Field mustard	mitochondrion	90.97	91.61
AT2G19790.1	Thale cress	mitochondrion	90.97	91.61
CDY35888	Canola	mitochondrion	90.97	90.97
CDX82722	Canola	mitochondrion	90.97	90.97
CDY48729	Canola	mitochondrion	90.28	90.91
CDY03335	Canola	mitochondrion	90.28	90.91
Bra036702.1-P	Field mustard	mitochondrion	90.28	90.91
Os10t0368400-01	Rice	cytosol, mitochondrion	89.58	90.21
KRH60179	Soybean	cytosol	45.14	72.22
GSMUA_Achr8P19280_001	Banana	cytosol	45.83	39.05
GSMUA_Achr8P26380_001	Banana	cytosol, mitochondrion	36.81	31.93
GSMUA_Achr8P15550_001	Banana	cytosol, mitochondrion	42.36	31.12
GSMUA_Achr3P24130_001	Banana	cytosol, mitochondrion	45.14	30.95
GSMUA_Achr9P11170_001	Banana	extracellular	43.06	22.79
GSMUA_AchrUn_...	Banana	cytosol	24.31	19.44

Protein Annotations

MapMan:22.5.2.2.4	Gene3D:3.30.450.60	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005802
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	GO:GO:0030124	EnsemblPlantsGene:GSMUA_Achr4G10500_001	EnsemblPlants:GSMUA_Achr4P10500_001	EnsemblPlants:GSMUA_Achr4T10500_001	InterPro:Longin-like_dom_sf
UniProt:M0SMR7	PFAM:PF01217	PIRSF:PIRSF015588	PANTHER:PTHR11753	PANTHER:PTHR11753:SF4	SUPFAM:SSF64356
UniParc:UPI000296E5B2	:	:	:	:	:

Description

AP-4 complex subunit sigma [Source:GMGC_GENE;Acc:GSMUA_Achr4G10500_001]

Coordinates

chr4:-:7597849..7603317

Molecular Weight (calculated)

16937.7 Da

IEP (calculated)

5.926

GRAVY (calculated)

-0.059

Length

144 amino acids

Sequence
(BLAST)

001: MGIRFVLLVN KQGQTRLAQY YAEHLTLDER RALEGEIVRK CLARTDQQCS FVEHRNYKIV YRRYASLFFL VGVDNDENEL AILEFIHLFV ETMDRHFGNV
101: CELDIMFHLE KAHFMLEEMV MNGCIVETSK SNILMPIQLM DKAS

Best Arabidopsis Sequence Match ( AT2G19790.1 )
(BLAST)

001: MGIRFILMVN KQGQTRLAQY YEWLTLEERR ALEGEIVRKC LARNDQQCSF VEHRNYKIVY RRYASLFFMV GVDDDENELA ILEFIHLLVE TMDKHFGNVC
101: ELDIMFHLEK AHFMLEEMVM NGCIVETSKA NILSPIQLMD KAH

Arabidopsis Description

AP-4 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:O82201]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.