Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 3
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G140700.1 | Wheat | cytosol, mitochondrion | 100.0 | 100.0 |
| TraesCS6A01G113800.1 | Wheat | cytosol, mitochondrion | 99.3 | 99.3 |
| KXG25094 | Sorghum | cytosol, mitochondrion | 98.6 | 98.6 |
| Zm00001d050256_P001 | Maize | cytosol, mitochondrion | 97.9 | 97.9 |
| Os08t0395300-01 | Rice | cytosol, mitochondrion | 97.9 | 97.9 |
| Os10t0368400-01 | Rice | cytosol, mitochondrion | 95.8 | 95.8 |
| GSMUA_Achr4P10500_001 | Banana | mitochondrion | 94.41 | 93.75 |
| KRH49010 | Soybean | mitochondrion | 91.61 | 91.61 |
| KRH74193 | Soybean | mitochondrion | 91.61 | 91.61 |
| VIT_11s0016g02840.t01 | Wine grape | cytosol, mitochondrion | 86.01 | 90.44 |
| Solyc05g026130.2.1 | Tomato | plastid | 89.51 | 89.51 |
| PGSC0003DMT400074468 | Potato | mitochondrion | 89.51 | 89.51 |
| AT2G19790.1 | Thale cress | mitochondrion | 88.81 | 88.81 |
| Bra039020.1-P | Field mustard | mitochondrion | 88.81 | 88.81 |
| CDX82722 | Canola | mitochondrion | 88.81 | 88.19 |
| CDY35888 | Canola | mitochondrion | 88.81 | 88.19 |
| CDY03335 | Canola | mitochondrion | 88.11 | 88.11 |
| Bra036702.1-P | Field mustard | mitochondrion | 88.11 | 88.11 |
| CDY48729 | Canola | mitochondrion | 88.11 | 88.11 |
| KRH60179 | Soybean | cytosol | 46.85 | 74.44 |
| TraesCS5D01G119700.1 | Wheat | mitochondrion | 46.15 | 46.48 |
| TraesCS5D01G430000.1 | Wheat | cytosol, mitochondrion | 43.36 | 38.51 |
| TraesCS4D01G235600.1 | Wheat | cytosol | 33.57 | 28.92 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G101600.1 | EnsemblPlantsGene:TraesCS6D01G101600 | Gene3D:3.30.450.60 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 |
| InterPro:AP_complex_ssu | InterPro:AP_mu_sigma_su | InterPro:Longin-like_dom_sf | PANTHER:PTHR11753 | PANTHER:PTHR11753:SF4 | PFAM:PF01217 |
| PIRSF:PIRSF015588 | SUPFAM:SSF64356 | MapMan:22.5.2.2.4 | : | : | : |
Description
No Description!
Coordinates
chr6D:+:65088319..65091516
Molecular Weight (calculated)
16857.6 Da
IEP (calculated)
5.928
GRAVY (calculated)
-0.088
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MGIRFVLLVN KQGQTRLAQY YEHLSLDERR ALEGEIVRKC LARTDQQCSF VEHRNYKVVY RRYASLFFLV GVDNDENELA ILEFIHLLVE TMDRHFGNVC
101: ELDIMFHLEK VHFMLEEMVM NGCIVETSKQ NILAPIQLME KTS
101: ELDIMFHLEK VHFMLEEMVM NGCIVETSKQ NILAPIQLME KTS
001: MGIRFILMVN KQGQTRLAQY YEWLTLEERR ALEGEIVRKC LARNDQQCSF VEHRNYKIVY RRYASLFFMV GVDDDENELA ILEFIHLLVE TMDKHFGNVC
101: ELDIMFHLEK AHFMLEEMVM NGCIVETSKA NILSPIQLMD KAH
101: ELDIMFHLEK AHFMLEEMVM NGCIVETSKA NILSPIQLMD KAH
Arabidopsis Description
AP-4 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:O82201]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.