Factsheet for VIT_11s0016g02840.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
cytosol 3
plasma membrane 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074468	Potato	mitochondrion	97.79	93.01
Solyc05g026130.2.1	Tomato	plastid	97.79	93.01
KRH49010	Soybean	mitochondrion	94.85	90.21
KRH74193	Soybean	mitochondrion	94.85	90.21
Bra039020.1-P	Field mustard	mitochondrion	92.65	88.11
AT2G19790.1	Thale cress	mitochondrion	92.65	88.11
CDX82722	Canola	mitochondrion	92.65	87.5
CDY35888	Canola	mitochondrion	92.65	87.5
Bra036702.1-P	Field mustard	mitochondrion	91.91	87.41
CDY03335	Canola	mitochondrion	91.91	87.41
CDY48729	Canola	mitochondrion	91.91	87.41
GSMUA_Achr4P10500_001	Banana	mitochondrion	91.91	86.81
KXG25094	Sorghum	cytosol, mitochondrion	90.44	86.01
TraesCS6D01G101600.1	Wheat	cytosol, mitochondrion	90.44	86.01
TraesCS6B01G140700.1	Wheat	cytosol, mitochondrion	90.44	86.01
Zm00001d050256_P001	Maize	cytosol, mitochondrion	89.71	85.31
TraesCS6A01G113800.1	Wheat	cytosol, mitochondrion	89.71	85.31
Os08t0395300-01	Rice	cytosol, mitochondrion	88.97	84.62
Os10t0368400-01	Rice	cytosol, mitochondrion	88.24	83.92
KRH60179	Soybean	cytosol	48.53	73.33
VIT_04s0023g03340.t01	Wine grape	cytosol	43.38	34.3
VIT_18s0001g14240.t01	Wine grape	cytosol	44.12	31.91
VIT_16s0050g00660.t01	Wine grape	golgi	40.44	31.07
VIT_04s0023g01770.t01	Wine grape	cytosol, mitochondrion	37.5	30.91
VIT_01s0127g00810.t01	Wine grape	golgi	40.44	30.9

Protein Annotations

EntrezGene:100249106	wikigene:100249106	MapMan:22.5.2.2.4	Gene3D:3.30.450.60	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su
ProteinID:CBI27971	ProteinID:CBI27971.3	UniProt:D7TBD6	EMBL:FN595756	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005802
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	GO:GO:0030124	EntrezGene:LOC100249106	wikigene:LOC100249106	InterPro:Longin-like_dom_sf	PFAM:PF01217
PIRSF:PIRSF015588	PANTHER:PTHR11753	PANTHER:PTHR11753:SF4	SUPFAM:SSF64356	TIGR:TC57458	UniParc:UPI0001BE3018
ArrayExpress:VIT_11s0016g02840	EnsemblPlantsGene:VIT_11s0016g02840	EnsemblPlants:VIT_11s0016g02840.t01	unigene:Vvi.8022	RefSeq:XP_002283179	RefSeq:XP_002283179.1

Description

AP complex subunit sigma [Source:UniProtKB/TrEMBL;Acc:D7TBD6]

Coordinates

chr11:-:2285448..2288842

Molecular Weight (calculated)

15966.5 Da

IEP (calculated)

5.605

GRAVY (calculated)

-0.138

Length

136 amino acids

Sequence
(BLAST)

001: MVNKQGQTRL AQYYEYLNLE ERRALEGEIV RKCLARNEQQ CSFVEHRTYK IVYRRYASLF FLVGVDNGEN ELAILEFIHL LVETMDRHFG NVCELDIMFH
101: LEKAHFMLEE MVMNGCIVET SKANILAPIQ LMDKAS

Best Arabidopsis Sequence Match ( AT2G19790.1 )
(BLAST)

001: MGIRFILMVN KQGQTRLAQY YEWLTLEERR ALEGEIVRKC LARNDQQCSF VEHRNYKIVY RRYASLFFMV GVDDDENELA ILEFIHLLVE TMDKHFGNVC
101: ELDIMFHLEK AHFMLEEMVM NGCIVETSKA NILSPIQLMD KAH

Arabidopsis Description

AP-4 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:O82201]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.