Factsheet for VIT_18s0001g14240.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
plasma membrane 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g081410.2.1	Tomato	plastid	72.87	96.48
PGSC0003DMT400025529	Potato	mitochondrion	72.87	96.48
Zm00001d007270_P001	Maize	mitochondrion	72.87	96.48
EES08264	Sorghum	mitochondrion	72.87	96.48
Os12t0207300-01	Rice	plasma membrane	72.34	95.77
KRH05944	Soybean	mitochondrion	72.34	95.77
EES16862	Sorghum	cytosol	72.34	95.77
TraesCS5D01G119700.1	Wheat	mitochondrion	71.81	95.07
KRH17427	Soybean	mitochondrion	71.81	95.07
HORVU5Hr1G033310.1	Barley	mitochondrion	71.81	95.07
TraesCS5B01G113000.1	Wheat	cytosol	71.28	94.37
AT1G47830.1	Thale cress	mitochondrion	70.74	93.66
CDY63352	Canola	cytosol, mitochondrion	71.81	93.1
CDY70589	Canola	cytosol	58.51	91.67
TraesCS5A01G112300.2	Wheat	mitochondrion	69.15	90.91
CDY52072	Canola	cytosol	73.4	89.61
Bra027439.1-P	Field mustard	cytosol	73.4	89.61
Bra015600.1-P	Field mustard	cytosol, mitochondrion	73.4	87.9
CDY06725	Canola	cytosol	73.4	87.9
GSMUA_Achr8P19280_001	Banana	cytosol	74.47	82.84
VIT_04s0023g03340.t01	Wine grape	cytosol	73.94	80.81
Zm00001d041778_P006	Maize	cytosol, mitochondrion	65.96	79.49
CDX71554	Canola	cytosol	50.53	79.17
VIT_11s0016g02840.t01	Wine grape	cytosol, mitochondrion	31.91	44.12
VIT_01s0127g00810.t01	Wine grape	golgi	39.36	41.57
VIT_16s0050g00660.t01	Wine grape	golgi	38.83	41.24
VIT_04s0023g01770.t01	Wine grape	cytosol, mitochondrion	30.85	35.15

Protein Annotations

EntrezGene:100260827	wikigene:100260827	MapMan:22.1.3.4	Gene3D:3.30.450.60	EMBL:AM474919	InterPro:AP_complex_ssu
InterPro:AP_mu_sigma_su	ProteinID:CAN68414	ProteinID:CAN68414.1	ProteinID:CBI19859	ProteinID:CBI19859.3	UniProt:E0CQ54
EMBL:FN595227	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	EntrezGene:LOC100260827	wikigene:LOC100260827	InterPro:Longin-like_dom_sf	PFAM:PF01217	PIRSF:PIRSF015588
PANTHER:PTHR11753	PANTHER:PTHR11753:SF17	SUPFAM:SSF64356	TIGR:TC64538	UniParc:UPI0001BE1CB4	ArrayExpress:VIT_18s0001g14240
EnsemblPlantsGene:VIT_18s0001g14240	EnsemblPlants:VIT_18s0001g14240.t01	RefSeq:XP_002275803	RefSeq:XP_002275803.1	:	:

Description

AP complex subunit sigma [Source:UniProtKB/TrEMBL;Acc:E0CQ54]

Coordinates

chr18:+:12257459..12261168

Molecular Weight (calculated)

22789.6 Da

IEP (calculated)

8.034

GRAVY (calculated)

-0.369

Length

188 amino acids

Sequence
(BLAST)

001: MITWKPLSHT SHSERRRFHK DSKDDRHRIS EVHRLFCVPL QPSLWRMIRF IILQNRQGKT RLAKYYVPLE ESEKHKVEYE VHRLVVNRDP KFTNFVEFRT
101: HKVIYRRYAG LFFSLCVDMT DNELAYLECI HLFVEILDHF FSNVCELDLV FNFHKVYLIL DEFILAGELQ ETSKKAIIER MGELEKQE

Best Arabidopsis Sequence Match ( AT1G47830.1 )
(BLAST)

001: MIRFILLQNR QGKTRLAKYY VPLEESEKHK VEYEVHRLVV NRDAKFTNFV EFRTHKVIYR RYAGLFFSVC VDITDNELAY LESIHLFVEI LDHFFSNVCE
101: LDLVFNFHKV YLILDEFILA GELQETSKRA IIERMSELEK LQ

Arabidopsis Description

AP17AP-2 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:Q84WL9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.