Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os12t0207300-01 | Rice | plasma membrane | 82.05 | 90.14 |
| Zm00001d007270_P001 | Maize | mitochondrion | 82.05 | 90.14 |
| EES16862 | Sorghum | cytosol | 82.05 | 90.14 |
| HORVU5Hr1G033310.1 | Barley | mitochondrion | 81.41 | 89.44 |
| TraesCS5D01G119700.1 | Wheat | mitochondrion | 81.41 | 89.44 |
| TraesCS5B01G113000.1 | Wheat | cytosol | 80.77 | 88.73 |
| KRH17427 | Soybean | mitochondrion | 80.77 | 88.73 |
| TraesCS5A01G112300.2 | Wheat | mitochondrion | 80.77 | 88.11 |
| KRH05944 | Soybean | mitochondrion | 80.13 | 88.03 |
| AT1G47830.1 | Thale cress | mitochondrion | 80.13 | 88.03 |
| PGSC0003DMT400025529 | Potato | mitochondrion | 80.13 | 88.03 |
| Solyc04g081410.2.1 | Tomato | plastid | 80.13 | 88.03 |
| CDY63352 | Canola | cytosol, mitochondrion | 80.13 | 86.21 |
| CDY70589 | Canola | cytosol | 65.38 | 85.0 |
| CDY52072 | Canola | cytosol | 80.13 | 81.17 |
| Bra027439.1-P | Field mustard | cytosol | 80.13 | 81.17 |
| CDX71554 | Canola | cytosol | 61.54 | 80.0 |
| Bra015600.1-P | Field mustard | cytosol, mitochondrion | 80.13 | 79.62 |
| CDY06725 | Canola | cytosol | 80.13 | 79.62 |
| GSMUA_Achr8P19280_001 | Banana | cytosol | 79.49 | 73.37 |
| VIT_04s0023g03340.t01 | Wine grape | cytosol | 78.85 | 71.51 |
| VIT_18s0001g14240.t01 | Wine grape | cytosol | 79.49 | 65.96 |
| Zm00001d050256_P001 | Maize | cytosol, mitochondrion | 40.38 | 44.06 |
| Zm00001d013128_P004 | Maize | cytosol, plastid | 48.72 | 40.21 |
| Zm00001d004311_P001 | Maize | extracellular | 19.23 | 37.04 |
| Zm00001d034595_P001 | Maize | cytosol | 36.54 | 32.02 |
| Zm00001d047992_P006 | Maize | cytosol, mitochondrion | 34.62 | 30.68 |
| Zm00001d010247_P001 | Maize | extracellular | 19.23 | 27.78 |
| Zm00001d034337_P005 | Maize | cytosol | 49.36 | 24.52 |
| Zm00001d008712_P001 | Maize | extracellular | 22.44 | 16.05 |
| Zm00001d041448_P001 | Maize | plastid | 23.72 | 13.03 |
| Zm00001d042538_P001 | Maize | plastid | 24.36 | 12.75 |
Protein Annotations
| EntrezGene:103650611 | MapMan:22.1.3.4 | Gene3D:3.30.450.60 | UniProt:A0A1D6MY50 | InterPro:AP_complex_ssu | InterPro:AP_mu_sigma_su |
| GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 |
| GO:GO:0006886 | GO:GO:0008150 | GO:GO:0008565 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016192 |
| InterPro:Longin-like_dom_sf | ProteinID:ONM33647.1 | PFAM:PF01217 | PIRSF:PIRSF015588 | PANTHER:PTHR11753 | PANTHER:PTHR11753:SF17 |
| SUPFAM:SSF64356 | UniParc:UPI00084378D0 | EnsemblPlantsGene:Zm00001d041778 | EnsemblPlants:Zm00001d041778_P006 | EnsemblPlants:Zm00001d041778_T006 | : |
Description
AP-2 complex subunit sigma
Coordinates
chr3:+:137460360..137470245
Molecular Weight (calculated)
18664.5 Da
IEP (calculated)
7.127
GRAVY (calculated)
-0.110
Length
156 amino acids
Sequence
(BLAST)
(BLAST)
001: MIRFILLQNR QGKTRLAKYY VALEDSEKHK VEYEVHRLVV NRDPKFTNFV EFRTHKVIYR RYAGLFFSIC VDITDNELAY LECIHLFVEI LDHFFSNVCE
101: LDLVFNFHKV YLILDEFILA GELQETSKRL LDFSFQNPDF TSTPADRRPS VRAVRF
101: LDLVFNFHKV YLILDEFILA GELQETSKRL LDFSFQNPDF TSTPADRRPS VRAVRF
001: MIRFILLQNR QGKTRLAKYY VPLEESEKHK VEYEVHRLVV NRDAKFTNFV EFRTHKVIYR RYAGLFFSVC VDITDNELAY LESIHLFVEI LDHFFSNVCE
101: LDLVFNFHKV YLILDEFILA GELQETSKRA IIERMSELEK LQ
101: LDLVFNFHKV YLILDEFILA GELQETSKRA IIERMSELEK LQ
Arabidopsis Description
AP17AP-2 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:Q84WL9]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.