Factsheet for Zm00001d007270_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 3
plasma membrane 2
golgi 2
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	golgi, nucleus, plasma membrane
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES08264	Sorghum	mitochondrion	100.0	100.0
KRH17427	Soybean	mitochondrion	98.59	98.59
KRH05944	Soybean	mitochondrion	97.89	97.89
Solyc04g081410.2.1	Tomato	plastid	95.77	95.77
PGSC0003DMT400025529	Potato	mitochondrion	95.77	95.77
AT1G47830.1	Thale cress	mitochondrion	95.07	95.07
CDY63352	Canola	cytosol, mitochondrion	95.77	93.79
CDY70589	Canola	cytosol	78.87	93.33
Bra027439.1-P	Field mustard	cytosol	95.77	88.31
CDY52072	Canola	cytosol	95.77	88.31
Bra015600.1-P	Field mustard	cytosol, mitochondrion	95.77	86.62
CDY06725	Canola	cytosol	95.77	86.62
Zm00001d041778_P006	Maize	cytosol, mitochondrion	90.14	82.05
GSMUA_Achr8P19280_001	Banana	cytosol	95.07	79.88
CDX71554	Canola	cytosol	66.9	79.17
VIT_04s0023g03340.t01	Wine grape	cytosol	95.77	79.07
VIT_18s0001g14240.t01	Wine grape	cytosol	96.48	72.87
Zm00001d050256_P001	Maize	cytosol, mitochondrion	46.48	46.15
Zm00001d013128_P004	Maize	cytosol, plastid	54.93	41.27
Zm00001d004311_P001	Maize	extracellular	21.13	37.04
Zm00001d047992_P006	Maize	cytosol, mitochondrion	41.55	33.52
Zm00001d034595_P001	Maize	cytosol	41.55	33.15
Zm00001d010247_P001	Maize	extracellular	22.54	29.63
Zm00001d034337_P005	Maize	cytosol	55.63	25.16
Zm00001d008712_P001	Maize	extracellular	25.35	16.51
Zm00001d041448_P001	Maize	plastid	26.76	13.38
Zm00001d042538_P001	Maize	plastid	27.46	13.09

Protein Annotations

MapMan:22.1.3.4	Gene3D:3.30.450.60	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su	EMBL:BT060670	UniProt:C0HEB4
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005886
GO:GO:0005905	GO:GO:0006810	GO:GO:0006886	GO:GO:0006897	GO:GO:0008150	GO:GO:0008565
GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	InterPro:Longin-like_dom_sf	ProteinID:ONM26429.1	PFAM:PF01217
PIRSF:PIRSF015588	PANTHER:PTHR11753	PANTHER:PTHR11753:SF17	SUPFAM:SSF64356	UniParc:UPI000151E336	EnsemblPlantsGene:Zm00001d007270
EnsemblPlants:Zm00001d007270_P001	EnsemblPlants:Zm00001d007270_T001	:	:	:	:

Description

clathrin coat assembly protein AP17 clathrin coat assembly protein AP17

Coordinates

chr2:-:226300833..226306935

Molecular Weight (calculated)

17052.8 Da

IEP (calculated)

6.240

GRAVY (calculated)

-0.064

Length

142 amino acids

Sequence
(BLAST)

001: MIRFILLQNR QGKTRLAKYY VPLEDSEKHK VEYEVHRLVV NRDPKFTNFV EFRTHKVIYR RYAGLFFSIC VDITDNELAY LECIHLFVEI LDHFFSNVCE
101: LDLVFNFHKV YLILDEFILA GELQETSKKA IIERMGELEK LE

Best Arabidopsis Sequence Match ( AT1G47830.1 )
(BLAST)

001: MIRFILLQNR QGKTRLAKYY VPLEESEKHK VEYEVHRLVV NRDAKFTNFV EFRTHKVIYR RYAGLFFSVC VDITDNELAY LESIHLFVEI LDHFFSNVCE
101: LDLVFNFHKV YLILDEFILA GELQETSKRA IIERMSELEK LQ

Arabidopsis Description

AP17AP-2 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:Q84WL9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.