Factsheet for PGSC0003DMT400025529

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 3
plasma membrane 1
golgi 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g081410.2.1	Tomato	plastid	100.0	100.0
Os12t0207300-01	Rice	plasma membrane	96.48	96.48
EES16862	Sorghum	cytosol	96.48	96.48
EES08264	Sorghum	mitochondrion	95.77	95.77
Zm00001d007270_P001	Maize	mitochondrion	95.77	95.77
AT1G47830.1	Thale cress	mitochondrion	95.77	95.77
KRH05944	Soybean	mitochondrion	95.07	95.07
TraesCS5D01G119700.1	Wheat	mitochondrion	94.37	94.37
HORVU5Hr1G033310.1	Barley	mitochondrion	94.37	94.37
KRH17427	Soybean	mitochondrion	94.37	94.37
CDY63352	Canola	cytosol, mitochondrion	95.77	93.79
TraesCS5B01G113000.1	Wheat	cytosol	93.66	93.66
CDY70589	Canola	cytosol	78.17	92.5
TraesCS5A01G112300.2	Wheat	mitochondrion	90.85	90.21
CDY52072	Canola	cytosol	95.77	88.31
Bra027439.1-P	Field mustard	cytosol	95.77	88.31
Bra015600.1-P	Field mustard	cytosol, mitochondrion	95.07	85.99
CDY06725	Canola	cytosol	95.07	85.99
GSMUA_Achr8P19280_001	Banana	cytosol	97.18	81.66
Zm00001d041778_P006	Maize	cytosol, mitochondrion	88.03	80.13
CDX71554	Canola	cytosol	67.61	80.0
VIT_04s0023g03340.t01	Wine grape	cytosol	95.77	79.07
VIT_18s0001g14240.t01	Wine grape	cytosol	96.48	72.87
PGSC0003DMT400015459	Potato	cytosol	47.89	47.55
PGSC0003DMT400015461	Potato	cytosol, mitochondrion	52.82	46.58
PGSC0003DMT400074468	Potato	mitochondrion	45.77	45.45
PGSC0003DMT400009269	Potato	cytosol	38.03	33.13
PGSC0003DMT400001875	Potato	cytosol	31.69	26.79

Protein Annotations

EntrezGene:102595611	MapMan:22.1.3.4	Gene3D:3.30.450.60	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	InterPro:Longin-like_dom_sf
UniProt:M1ALJ9	PFAM:PF01217	EnsemblPlantsGene:PGSC0003DMG400009862	PGSC:PGSC0003DMG400009862	EnsemblPlants:PGSC0003DMT400025529	PIRSF:PIRSF015588
PANTHER:PTHR11753	PANTHER:PTHR11753:SF17	SUPFAM:SSF64356	UniParc:UPI0002766061	RefSeq:XP_006342043.1	:

Description

Clathrin coat assembly protein AP17 [Source:PGSC_GENE;Acc:PGSC0003DMG400009862]

Coordinates

chr4:+:70789202..70792925

Molecular Weight (calculated)

17107.8 Da

IEP (calculated)

6.242

GRAVY (calculated)

-0.146

Length

142 amino acids

Sequence
(BLAST)

001: MIRFILLQNR QGKTRLAKYY IPLEESEKHK VEYEVHRLVV NRDPKFTNFV EFRTHKVIYR RYAGLFFSLC VDITDNELAY LESIHLFVEI LDHFFSNVCE
101: LDLVFNFHKV YLILDEFILA GELQETSKRA IIERMGELEK QE

Best Arabidopsis Sequence Match ( AT1G47830.1 )
(BLAST)

001: MIRFILLQNR QGKTRLAKYY VPLEESEKHK VEYEVHRLVV NRDAKFTNFV EFRTHKVIYR RYAGLFFSVC VDITDNELAY LESIHLFVEI LDHFFSNVCE
101: LDLVFNFHKV YLILDEFILA GELQETSKRA IIERMSELEK LQ

Arabidopsis Description

AP17AP-2 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:Q84WL9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.