Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 3
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400015461 | Potato | cytosol, mitochondrion | 81.12 | 72.05 |
| TraesCS5B01G423600.1 | Wheat | cytosol, mitochondrion | 76.22 | 67.7 |
| TraesCS5D01G430000.1 | Wheat | cytosol, mitochondrion | 76.22 | 67.7 |
| Os03t0783700-00 | Rice | plasma membrane | 75.52 | 67.08 |
| HORVU5Hr1G102770.1 | Barley | extracellular, golgi | 77.62 | 61.67 |
| HORVU5Hr1G102930.4 | Barley | extracellular, golgi | 77.62 | 61.67 |
| KRH73467 | Soybean | cytosol, mitochondrion | 70.63 | 59.41 |
| Zm00001d013128_P004 | Maize | cytosol, plastid | 73.43 | 55.56 |
| GSMUA_Achr3P24130_001 | Banana | cytosol, mitochondrion | 77.62 | 52.86 |
| GSMUA_Achr8P15550_001 | Banana | cytosol, mitochondrion | 72.03 | 52.55 |
| PGSC0003DMT400025529 | Potato | mitochondrion | 47.55 | 47.89 |
| KXG37427 | Sorghum | cytosol, nucleus, plastid | 76.92 | 41.04 |
| GSMUA_Achr9P11170_001 | Banana | extracellular | 74.13 | 38.97 |
| PGSC0003DMT400074468 | Potato | mitochondrion | 38.46 | 38.46 |
| Zm00001d034337_P005 | Maize | cytosol | 77.62 | 35.35 |
| PGSC0003DMT400009269 | Potato | cytosol | 30.77 | 26.99 |
| PGSC0003DMT400001875 | Potato | cytosol | 23.78 | 20.24 |
Protein Annotations
| MapMan:22.1.2.4 | Gene3D:3.30.450.60 | InterPro:AP_complex_ssu | InterPro:AP_mu_sigma_su | InterPro:Clathrin_sm-chain_CS | GO:GO:0003674 |
| GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 |
| GO:GO:0006886 | GO:GO:0008150 | GO:GO:0008565 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016192 |
| GO:GO:0030117 | InterPro:Longin-like_dom_sf | UniProt:M1A624 | PFAM:PF01217 | EnsemblPlantsGene:PGSC0003DMG401006035 | PGSC:PGSC0003DMG401006035 |
| EnsemblPlants:PGSC0003DMT400015459 | ScanProsite:PS00989 | PANTHER:PTHR11753 | PANTHER:PTHR11753:SF32 | SUPFAM:SSF64356 | UniParc:UPI0002969FD2 |
Description
AP-1 complex subunit sigma-2 [Source:PGSC_GENE;Acc:PGSC0003DMG401006035]
Coordinates
chr11:-:8023785..8027235
Molecular Weight (calculated)
16942.5 Da
IEP (calculated)
7.448
GRAVY (calculated)
-0.154
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: FQIHFVLLIS RQGKVRLTKW YSPYTQKERT KVIRELSGMI LSRGPKLCNF VEWRGYKVVY KRYASLYFCM CIDQEDNELE VLEIIHHFVE ILDRYFGSVC
101: ELDLIFNFHK VVSESAPLLV EISARTLSPE RWVEYNNPQT ADG
101: ELDLIFNFHK VVSESAPLLV EISARTLSPE RWVEYNNPQT ADG
001: MIHFVLLVSR QGKVRLTKWY SPYAQKERSK VIRELSGVIL NRGPKLCNFV EWRGYKVVYK RYASLYFCMC IDQEDNELEV LEIIHHYVEI LDRYFGSVCE
101: LDLIFNFHKA YYILDELLIA GELQESSKKT VARIISAQDQ LVEVAKEEAS SISNIIAQAT NR
101: LDLIFNFHKA YYILDELLIA GELQESSKKT VARIISAQDQ LVEVAKEEAS SISNIIAQAT NR
Arabidopsis Description
AAP19-2AP-1 complex subunit sigma-2 [Source:UniProtKB/Swiss-Prot;Acc:O23685]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.