Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d011676_P001 | |
| Zm00001d036168_P001 | |
| Zm00001d043726_P001 | |
| Zm00001d052338_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os03t0783700-00 | Rice | plasma membrane | 50.64 | 98.76 |
| TraesCS5B01G423600.1 | Wheat | cytosol, mitochondrion | 50.0 | 97.52 |
| TraesCS5D01G430000.1 | Wheat | cytosol, mitochondrion | 50.0 | 97.52 |
| Solyc11g005220.1.1 | Tomato | nucleus | 48.41 | 94.41 |
| PGSC0003DMT400015461 | Potato | cytosol, mitochondrion | 48.41 | 94.41 |
| KRG90038 | Soybean | cytosol, mitochondrion | 46.82 | 91.3 |
| KRH17634 | Soybean | endoplasmic reticulum | 46.82 | 91.3 |
| Bra002054.1-P | Field mustard | cytosol, mitochondrion | 46.5 | 90.68 |
| AT2G17380.1 | Thale cress | cytosol, mitochondrion | 46.18 | 90.06 |
| AT4G35410.2 | Thale cress | mitochondrion | 46.18 | 89.51 |
| HORVU5Hr1G102770.1 | Barley | extracellular, golgi | 50.96 | 88.89 |
| HORVU5Hr1G102930.4 | Barley | extracellular, golgi | 50.96 | 88.89 |
| VIT_16s0050g00660.t01 | Wine grape | golgi | 49.68 | 88.14 |
| VIT_01s0127g00810.t01 | Wine grape | golgi | 48.73 | 85.96 |
| CDY69066 | Canola | cytosol | 47.13 | 83.62 |
| Zm00001d013128_P004 | Maize | cytosol, plastid | 49.04 | 81.48 |
| CDX69137 | Canola | extracellular | 46.82 | 79.46 |
| PGSC0003DMT400015459 | Potato | cytosol | 35.35 | 77.62 |
| GSMUA_Achr3P24130_001 | Banana | cytosol, mitochondrion | 51.27 | 76.67 |
| KRH73467 | Soybean | cytosol, mitochondrion | 41.4 | 76.47 |
| GSMUA_Achr8P15550_001 | Banana | cytosol, mitochondrion | 46.5 | 74.49 |
| CDX75500 | Canola | cytosol | 48.09 | 74.38 |
| Bra011613.1-P | Field mustard | cytosol | 48.09 | 74.38 |
| CDY50208 | Canola | extracellular, plasma membrane | 49.36 | 72.09 |
| KXG37427 | Sorghum | cytosol, nucleus, plastid | 54.14 | 63.43 |
| Zm00001d034595_P001 | Maize | cytosol | 35.35 | 62.36 |
| GSMUA_Achr9P11170_001 | Banana | extracellular | 48.41 | 55.88 |
| Zm00001d007270_P001 | Maize | mitochondrion | 25.16 | 55.63 |
| Zm00001d041778_P006 | Maize | cytosol, mitochondrion | 24.52 | 49.36 |
| Zm00001d050256_P001 | Maize | cytosol, mitochondrion | 19.11 | 41.96 |
| Zm00001d004311_P001 | Maize | extracellular | 9.55 | 37.04 |
| Zm00001d047992_P006 | Maize | cytosol, mitochondrion | 18.79 | 33.52 |
| Zm00001d010247_P001 | Maize | extracellular | 11.15 | 32.41 |
| Zm00001d008712_P001 | Maize | extracellular | 12.1 | 17.43 |
| Zm00001d041448_P001 | Maize | plastid | 12.74 | 14.08 |
| Zm00001d042538_P001 | Maize | plastid | 13.06 | 13.76 |
Protein Annotations
| MapMan:22.1.2.4 | Gene3D:3.30.450.60 | UniProt:A0A1D6L6Q4 | InterPro:AP_complex_ssu | InterPro:AP_mu_sigma_su | InterPro:Clathrin_sm-chain_CS |
| GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0008565 | GO:GO:0015031 | GO:GO:0016020 |
| GO:GO:0016192 | GO:GO:0030117 | InterPro:Longin-like_dom_sf | ProteinID:ONM09976.1 | PFAM:PF01217 | ScanProsite:PS00989 |
| PANTHER:PTHR11753 | PANTHER:PTHR11753:SF32 | SUPFAM:SSF64356 | UniParc:UPI00084328ED | EnsemblPlantsGene:Zm00001d034337 | EnsemblPlants:Zm00001d034337_P005 |
| EnsemblPlants:Zm00001d034337_T005 | SEG:seg | : | : | : | : |
Description
AP-1 complex subunit sigma-2
Coordinates
chr1:-:290196987..290202180
Molecular Weight (calculated)
34760.7 Da
IEP (calculated)
7.384
GRAVY (calculated)
-0.126
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRYDVESIL SSDLPVVGGA TGRAAKFPLD SLQPGSAAAM MLAGAAAASQ ATMPPSEKDY WSLPALHYQQ QQERQFPASA YEAYGSGGVN VDFTMGTSSG
101: SYLKSGGRPR KKLSLRDGVG KLFASGSDPI ITHACVTPTQ DPGLCCERAY PFTMINFVLL ISRQGKVRLT KWYSPYTQKE RTKVIRELSG LILTRGPKLC
201: NFVEWRGYKV VYRRYASLYF CMCIDAEDNE LEVLEIIHHF VEILDRYFGS VCELDLIFNF HKAYYILDEI LIAGELQESS KKNVARLIAA QDSLVEAAKE
301: EASSISNIIA QATK
101: SYLKSGGRPR KKLSLRDGVG KLFASGSDPI ITHACVTPTQ DPGLCCERAY PFTMINFVLL ISRQGKVRLT KWYSPYTQKE RTKVIRELSG LILTRGPKLC
201: NFVEWRGYKV VYRRYASLYF CMCIDAEDNE LEVLEIIHHF VEILDRYFGS VCELDLIFNF HKAYYILDEI LIAGELQESS KKNVARLIAA QDSLVEAAKE
301: EASSISNIIA QATK
001: MIHFVLLVSR QGKVRLTKWY SPYTQKERSK VIRELSGVIL NRGPKLCNFI EWRGYKVVYK RYASLYFCMC IDEADNELEV LEIIHHYVEI LDRYFGSVCE
101: LDLIFNFHKA YYILDELLIA GELQESSKKT VARIISAQDQ LVEVAKEEAS SISNIIAQAT K
101: LDLIFNFHKA YYILDELLIA GELQESSKKT VARIISAQDQ LVEVAKEEAS SISNIIAQAT K
Arabidopsis Description
AAP19-1AP-1 complex subunit sigma-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LEZ8]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.