Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- extracellular 4
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d004311_P001 | Maize | extracellular | 67.59 | 90.12 |
| Zm00001d008712_P001 | Maize | extracellular | 94.44 | 46.79 |
| Os03t0228400-01 | Rice | cytosol, mitochondrion | 58.33 | 37.95 |
| Zm00001d047992_P006 | Maize | cytosol, mitochondrion | 61.11 | 37.5 |
| TraesCS4A01G078400.1 | Wheat | cytosol | 57.41 | 37.35 |
| TraesCS4B01G234400.1 | Wheat | cytosol | 57.41 | 37.35 |
| TraesCS4D01G235600.1 | Wheat | cytosol | 56.48 | 36.75 |
| GSMUA_Achr8P26380_001 | Banana | cytosol, mitochondrion | 55.56 | 36.14 |
| Zm00001d041448_P001 | Maize | plastid | 94.44 | 35.92 |
| Os01t0353600-00 | Rice | mitochondrion | 53.7 | 34.94 |
| Zm00001d042538_P001 | Maize | plastid | 93.52 | 33.89 |
| VIT_04s0023g01770.t01 | Wine grape | cytosol, mitochondrion | 50.93 | 33.33 |
| KRH08275 | Soybean | cytosol, mitochondrion | 48.15 | 31.33 |
| KRH69924 | Soybean | cytosol, mitochondrion | 48.15 | 31.33 |
| PGSC0003DMT400009269 | Potato | cytosol | 46.3 | 30.67 |
| AT3G50860.1 | Thale cress | cytosol | 46.3 | 30.12 |
| Bra012884.1-P | Field mustard | cytosol | 46.3 | 29.94 |
| Solyc02g085240.2.1 | Tomato | cytosol | 46.3 | 29.94 |
| Solyc01g109640.2.1 | Tomato | cytosol | 45.37 | 29.7 |
| CDX90681 | Canola | cytosol | 45.37 | 29.34 |
| GSMUA_AchrUn_... | Banana | cytosol | 47.22 | 28.33 |
| Bra036855.1-P | Field mustard | cytosol | 21.3 | 25.56 |
| CDY28984 | Canola | cytosol | 47.22 | 24.17 |
| Zm00001d050256_P001 | Maize | cytosol, mitochondrion | 31.48 | 23.78 |
| Zm00001d007270_P001 | Maize | mitochondrion | 29.63 | 22.54 |
| PGSC0003DMT400001875 | Potato | cytosol | 33.33 | 21.43 |
| CDX73778 | Canola | cytosol, endoplasmic reticulum, nucleus | 25.93 | 19.72 |
| Zm00001d034595_P001 | Maize | cytosol | 32.41 | 19.66 |
| Zm00001d041778_P006 | Maize | cytosol, mitochondrion | 27.78 | 19.23 |
| Zm00001d013128_P004 | Maize | cytosol, plastid | 32.41 | 18.52 |
| Zm00001d034337_P005 | Maize | cytosol | 32.41 | 11.15 |
Protein Annotations
| Gene3D:3.30.450.60 | MapMan:35.1 | UniProt:A0A1D6FQ28 | InterPro:APS3 | InterPro:AP_complex_ssu | InterPro:AP_mu_sigma_su |
| ProteinID:AQK93731.1 | InterPro:Clathrin_sm-chain_CS | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 |
| GO:GO:0008565 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016192 | GO:GO:0016829 | GO:GO:0030117 |
| GO:GO:0030123 | InterPro:Longin-like_dom_sf | PFAM:PF01217 | PIRSF:PIRSF015588 | ScanProsite:PS00989 | PANTHER:PTHR11753 |
| PANTHER:PTHR11753:SF2 | SUPFAM:SSF64356 | UniParc:UPI0008442D4E | EnsemblPlantsGene:Zm00001d010247 | EnsemblPlants:Zm00001d010247_P001 | EnsemblPlants:Zm00001d010247_T001 |
Description
Phenylalanine ammonia-lyase 1
Coordinates
chr8:-:105888804..105889550
Molecular Weight (calculated)
12711.7 Da
IEP (calculated)
4.956
GRAVY (calculated)
0.619
Length
108 amino acids
Sequence
(BLAST)
(BLAST)
001: MIFFFCALQG TKMVYKHLAT LYFVFVFDSS ENELAMLDLV QVFVETLDRC FKNVCELDII FNFNKVPYVH MILPFLSFYN RIVCLSRMQG FYPAENSIYD
101: SSIACCMF
101: SSIACCMF
001: MIKAVMMMNT QGKPRLAKFY DYLPVEKQQE LIRGVFSVLC SRPENVSNFL EIESLFGPDS RLVYKHYATL YFVLVFDGSE NELAMLDLIQ VLVETLDKCF
101: SNVCELDIVF NYSKMHAVLD EIVFGGQVLE TSSAEVMKAV EEISKLEAAS NSISLVPKSV SGWRGR
101: SNVCELDIVF NYSKMHAVLD EIVFGGQVLE TSSAEVMKAV EEISKLEAAS NSISLVPKSV SGWRGR
Arabidopsis Description
AP-3 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ37]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.