Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012884.1-P | Field mustard | cytosol | 95.78 | 95.21 |
| CDX90681 | Canola | cytosol | 95.18 | 94.61 |
| VIT_04s0023g01770.t01 | Wine grape | cytosol, mitochondrion | 83.13 | 83.64 |
| KRH69924 | Soybean | cytosol, mitochondrion | 79.52 | 79.52 |
| KRH08275 | Soybean | cytosol, mitochondrion | 78.92 | 78.92 |
| Bra036855.1-P | Field mustard | cytosol | 42.17 | 77.78 |
| CDY28984 | Canola | cytosol | 95.18 | 74.88 |
| GSMUA_Achr8P26380_001 | Banana | cytosol, mitochondrion | 73.49 | 73.49 |
| Solyc02g085240.2.1 | Tomato | cytosol | 71.08 | 70.66 |
| PGSC0003DMT400009269 | Potato | cytosol | 66.27 | 67.48 |
| TraesCS4B01G234400.1 | Wheat | cytosol | 65.06 | 65.06 |
| TraesCS4A01G078400.1 | Wheat | cytosol | 65.06 | 65.06 |
| TraesCS4D01G235600.1 | Wheat | cytosol | 65.06 | 65.06 |
| Os03t0228400-01 | Rice | cytosol, mitochondrion | 64.46 | 64.46 |
| EER92601 | Sorghum | mitochondrion | 62.65 | 62.65 |
| Os01t0353600-00 | Rice | mitochondrion | 62.05 | 62.05 |
| Zm00001d004311_P001 | Maize | extracellular | 28.92 | 59.26 |
| CDX73778 | Canola | cytosol, endoplasmic reticulum, nucleus | 50.6 | 59.15 |
| Zm00001d047992_P006 | Maize | cytosol, mitochondrion | 61.45 | 57.95 |
| Zm00001d010247_P001 | Maize | extracellular | 30.12 | 46.3 |
| OQU84502 | Sorghum | mitochondrion | 57.83 | 45.28 |
| GSMUA_AchrUn_... | Banana | cytosol | 44.58 | 41.11 |
| AT1G47830.1 | Thale cress | mitochondrion | 34.34 | 40.14 |
| AT2G19790.1 | Thale cress | mitochondrion | 33.13 | 38.46 |
| AT2G17380.1 | Thale cress | cytosol, mitochondrion | 33.13 | 34.16 |
| AT4G35410.2 | Thale cress | mitochondrion | 33.13 | 33.95 |
| Zm00001d008712_P001 | Maize | extracellular | 32.53 | 24.77 |
| Zm00001d041448_P001 | Maize | plastid | 34.94 | 20.42 |
| Zm00001d042538_P001 | Maize | plastid | 34.94 | 19.46 |
Protein Annotations
| MapMan:22.1.5.4 | Gene3D:3.30.450.60 | EntrezGene:824250 | ProteinID:AEE78719.1 | ProteinID:ANM65334.1 | InterPro:APS3 |
| InterPro:AP_complex_ssu | InterPro:AP_mu_sigma_su | ArrayExpress:AT3G50860 | EnsemblPlantsGene:AT3G50860 | RefSeq:AT3G50860 | TAIR:AT3G50860 |
| RefSeq:AT3G50860-TAIR-G | EnsemblPlants:AT3G50860.1 | TAIR:AT3G50860.1 | EMBL:AY065287 | EMBL:AY096709 | Unigene:At.28528 |
| ProteinID:CAB42915.1 | InterPro:Clathrin_sm-chain_CS | ncoils:Coil | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0006810 | GO:GO:0006886 |
| GO:GO:0008150 | GO:GO:0008565 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016192 | GO:GO:0030117 |
| GO:GO:0030123 | GO:GO:0030659 | GO:GO:0031410 | InterPro:Longin-like_dom_sf | RefSeq:NP_001327312.1 | RefSeq:NP_190655.2 |
| PFAM:PF01217 | PIRSF:PIRSF015588 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00989 | PANTHER:PTHR11753 | PANTHER:PTHR11753:SF2 | UniProt:Q8VZ37 |
| SUPFAM:SSF64356 | UniParc:UPI00000A0ECE | : | : | : | : |
Description
AP-3 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ37]
Coordinates
chr3:+:18901997..18904197
Molecular Weight (calculated)
18729.8 Da
IEP (calculated)
4.701
GRAVY (calculated)
0.140
Length
166 amino acids
Sequence
(BLAST)
(BLAST)
001: MIKAVMMMNT QGKPRLAKFY DYLPVEKQQE LIRGVFSVLC SRPENVSNFL EIESLFGPDS RLVYKHYATL YFVLVFDGSE NELAMLDLIQ VLVETLDKCF
101: SNVCELDIVF NYSKMHAVLD EIVFGGQVLE TSSAEVMKAV EEISKLEAAS NSISLVPKSV SGWRGR
101: SNVCELDIVF NYSKMHAVLD EIVFGGQVLE TSSAEVMKAV EEISKLEAAS NSISLVPKSV SGWRGR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.