Factsheet for Os01t0353600-00

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 5
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0228400-01	Rice	cytosol, mitochondrion	94.58	94.58
TraesCS4D01G235600.1	Wheat	cytosol	86.14	86.14
TraesCS4B01G234400.1	Wheat	cytosol	86.14	86.14
TraesCS4A01G078400.1	Wheat	cytosol	85.54	85.54
EER92601	Sorghum	mitochondrion	84.94	84.94
Zm00001d047992_P006	Maize	cytosol, mitochondrion	84.94	80.11
GSMUA_Achr8P26380_001	Banana	cytosol, mitochondrion	71.69	71.69
VIT_04s0023g01770.t01	Wine grape	cytosol, mitochondrion	67.47	67.88
Zm00001d004311_P001	Maize	extracellular	31.93	65.43
OQU84502	Sorghum	mitochondrion	81.33	63.68
AT3G50860.1	Thale cress	cytosol	62.05	62.05
KRH08275	Soybean	cytosol, mitochondrion	62.05	62.05
Bra012884.1-P	Field mustard	cytosol	62.05	61.68
CDX90681	Canola	cytosol	61.45	61.08
KRH69924	Soybean	cytosol, mitochondrion	60.24	60.24
Solyc02g085240.2.1	Tomato	cytosol	60.24	59.88
Solyc01g109640.2.1	Tomato	cytosol	59.04	59.39
PGSC0003DMT400009269	Potato	cytosol	57.23	58.28
Zm00001d010247_P001	Maize	extracellular	34.94	53.7
CDY28984	Canola	cytosol	62.65	49.29
Bra036855.1-P	Field mustard	cytosol	26.51	48.89
PGSC0003DMT400001875	Potato	cytosol	47.59	47.02
GSMUA_AchrUn_...	Banana	cytosol	45.18	41.67
Os12t0207300-01	Rice	plasma membrane	35.54	41.55
CDX73778	Canola	cytosol, endoplasmic reticulum, nucleus	34.94	40.85
Os03t0783700-00	Rice	plasma membrane	34.94	36.02
Os08t0395300-01	Rice	cytosol, mitochondrion	29.52	34.27
Os10t0368400-01	Rice	cytosol, mitochondrion	28.31	32.87
Zm00001d008712_P001	Maize	extracellular	37.95	28.9
Zm00001d041448_P001	Maize	plastid	40.36	23.59
Zm00001d042538_P001	Maize	plastid	40.36	22.48

Protein Annotations

MapMan:22.1.5.4	Gene3D:3.30.450.60	UniProt:A0A0P0V2K3	InterPro:APS3	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su
ProteinID:BAS72047.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565
GO:GO:0015031	GO:GO:0016020	GO:GO:0030123	InterPro:Longin-like_dom_sf	EnsemblPlantsGene:Os01g0353600	EnsemblPlants:Os01t0353600-00
PFAM:PF01217	PIRSF:PIRSF015588	PANTHER:PTHR11753	PANTHER:PTHR11753:SF2	SUPFAM:SSF64356	UniParc:UPI000393BF68

Description

Similar to AP-3 complex subunit sigma-2. (Os01t0353600-00)

Coordinates

chr1:+:14171226..14175788

Molecular Weight (calculated)

18881.0 Da

IEP (calculated)

7.058

GRAVY (calculated)

0.071

Length

166 amino acids

Sequence
(BLAST)

001: MIQAVMVMST QGKPRLLKFY SYHAPEKHQE LVRAVFQLLS ARPDSVSNFV KVDAIFGPGA KLIYKHLATL YLGFVFDGSE NELAVLDLVQ VFVETLDRCF
101: KNVCELHIVF NFNKLHTILD EMILGGQVIE TSSEQIMRSV EEIARLEKQS NTTSLIPKSI SERFSR

Best Arabidopsis Sequence Match ( AT3G50860.1 )
(BLAST)

001: MIKAVMMMNT QGKPRLAKFY DYLPVEKQQE LIRGVFSVLC SRPENVSNFL EIESLFGPDS RLVYKHYATL YFVLVFDGSE NELAMLDLIQ VLVETLDKCF
101: SNVCELDIVF NYSKMHAVLD EIVFGGQVLE TSSAEVMKAV EEISKLEAAS NSISLVPKSV SGWRGR

Arabidopsis Description

AP-3 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.