Factsheet for Zm00001d047992_P006

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92601	Sorghum	mitochondrion	90.34	95.78
Os03t0228400-01	Rice	cytosol, mitochondrion	84.66	89.76
TraesCS4B01G234400.1	Wheat	cytosol	82.95	87.95
TraesCS4A01G078400.1	Wheat	cytosol	82.39	87.35
TraesCS4D01G235600.1	Wheat	cytosol	82.39	87.35
Os01t0353600-00	Rice	mitochondrion	80.11	84.94
OQU84502	Sorghum	mitochondrion	92.05	76.42
Zm00001d004311_P001	Maize	extracellular	34.66	75.31
GSMUA_Achr8P26380_001	Banana	cytosol, mitochondrion	70.45	74.7
VIT_04s0023g01770.t01	Wine grape	cytosol, mitochondrion	64.2	68.48
KRH69924	Soybean	cytosol, mitochondrion	59.66	63.25
KRH08275	Soybean	cytosol, mitochondrion	59.09	62.65
Solyc02g085240.2.1	Tomato	cytosol	59.09	62.28
Bra012884.1-P	Field mustard	cytosol	59.09	62.28
CDX90681	Canola	cytosol	58.52	61.68
AT3G50860.1	Thale cress	cytosol	57.95	61.45
Zm00001d010247_P001	Maize	extracellular	37.5	61.11
PGSC0003DMT400009269	Potato	cytosol	55.68	60.12
Solyc01g109640.2.1	Tomato	cytosol	55.11	58.79
CDY28984	Canola	cytosol	59.66	49.76
Bra036855.1-P	Field mustard	cytosol	24.43	47.78
PGSC0003DMT400001875	Potato	cytosol	43.75	45.83
GSMUA_AchrUn_...	Banana	cytosol	43.75	42.78
Zm00001d007270_P001	Maize	mitochondrion	33.52	41.55
CDX73778	Canola	cytosol, endoplasmic reticulum, nucleus	29.55	36.62
Zm00001d050256_P001	Maize	cytosol, mitochondrion	28.98	35.66
Zm00001d041778_P006	Maize	cytosol, mitochondrion	30.68	34.62
Zm00001d008712_P001	Maize	extracellular	39.2	31.65
Zm00001d013128_P004	Maize	cytosol, plastid	32.95	30.69
Zm00001d034595_P001	Maize	cytosol	27.27	26.97
Zm00001d041448_P001	Maize	plastid	41.48	25.7
Zm00001d042538_P001	Maize	plastid	41.48	24.5
Zm00001d034337_P005	Maize	cytosol	33.52	18.79

Protein Annotations

EntrezGene:100191763	MapMan:22.1.5.4	Gene3D:3.30.450.60	UniProt:A0A1D6PFK8	InterPro:APS3	InterPro:AP_complex_ssu
InterPro:AP_mu_sigma_su	ProteinID:AQL08282.1	InterPro:Clathrin_sm-chain_CS	ncoils:Coil	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030117
GO:GO:0030123	InterPro:Longin-like_dom_sf	PFAM:PF01217	PIRSF:PIRSF015588	ScanProsite:PS00989	PANTHER:PTHR11753
PANTHER:PTHR11753:SF2	SUPFAM:SSF64356	UniParc:UPI000842DF1F	EnsemblPlantsGene:Zm00001d047992	EnsemblPlants:Zm00001d047992_P006	EnsemblPlants:Zm00001d047992_T006

Description

AP-3 complex subunit sigma

Coordinates

chr9:+:147411759..147414586

Molecular Weight (calculated)

20136.5 Da

IEP (calculated)

5.723

GRAVY (calculated)

0.028

Length

176 amino acids

Sequence
(BLAST)

001: MIQAVMVIST QAKPRLLKFY SFQVPNPLLS SLQPPEKHQD LVRCVFQLLS ARPESASNFV KVDSIFGPGT KMVYKHLATL YFVFVFDSSE NELAMLDLVQ
101: VFVETLDRCF KNVCELDIVF NFNKLHTILD EMISGGQVIE TSSEQIMKSV EEIERLEKQS STTSFIPKSI TERFTR

Best Arabidopsis Sequence Match ( AT3G50860.1 )
(BLAST)

001: MIKAVMMMNT QGKPRLAKFY DYLPVEKQQE LIRGVFSVLC SRPENVSNFL EIESLFGPDS RLVYKHYATL YFVLVFDGSE NELAMLDLIQ VLVETLDKCF
101: SNVCELDIVF NYSKMHAVLD EIVFGGQVLE TSSAEVMKAV EEISKLEAAS NSISLVPKSV SGWRGR

Arabidopsis Description

AP-3 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.