Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g085240.2.1 | Tomato | cytosol | 95.71 | 93.41 |
| VIT_04s0023g01770.t01 | Wine grape | cytosol, mitochondrion | 69.33 | 68.48 |
| KRH08275 | Soybean | cytosol, mitochondrion | 68.71 | 67.47 |
| GSMUA_Achr8P26380_001 | Banana | cytosol, mitochondrion | 68.1 | 66.87 |
| KRH69924 | Soybean | cytosol, mitochondrion | 68.1 | 66.87 |
| Bra012884.1-P | Field mustard | cytosol | 68.1 | 66.47 |
| CDX90681 | Canola | cytosol | 68.1 | 66.47 |
| AT3G50860.1 | Thale cress | cytosol | 67.48 | 66.27 |
| EER92601 | Sorghum | mitochondrion | 63.19 | 62.05 |
| TraesCS4B01G234400.1 | Wheat | cytosol | 62.58 | 61.45 |
| TraesCS4A01G078400.1 | Wheat | cytosol | 62.58 | 61.45 |
| TraesCS4D01G235600.1 | Wheat | cytosol | 61.96 | 60.84 |
| Zm00001d004311_P001 | Maize | extracellular | 30.06 | 60.49 |
| Os03t0228400-01 | Rice | cytosol, mitochondrion | 61.35 | 60.24 |
| Os01t0353600-00 | Rice | mitochondrion | 58.28 | 57.23 |
| Zm00001d047992_P006 | Maize | cytosol, mitochondrion | 60.12 | 55.68 |
| Bra036855.1-P | Field mustard | cytosol | 29.45 | 53.33 |
| CDY28984 | Canola | cytosol | 67.48 | 52.13 |
| PGSC0003DMT400001875 | Potato | cytosol | 50.31 | 48.81 |
| Zm00001d010247_P001 | Maize | extracellular | 30.67 | 46.3 |
| OQU84502 | Sorghum | mitochondrion | 60.12 | 46.23 |
| CDX73778 | Canola | cytosol, endoplasmic reticulum, nucleus | 38.04 | 43.66 |
| GSMUA_AchrUn_... | Banana | cytosol | 44.79 | 40.56 |
| PGSC0003DMT400025529 | Potato | mitochondrion | 33.13 | 38.03 |
| PGSC0003DMT400015461 | Potato | cytosol, mitochondrion | 32.52 | 32.92 |
| PGSC0003DMT400074468 | Potato | mitochondrion | 26.99 | 30.77 |
| PGSC0003DMT400015459 | Potato | cytosol | 26.99 | 30.77 |
| Zm00001d008712_P001 | Maize | extracellular | 33.74 | 25.23 |
| Zm00001d041448_P001 | Maize | plastid | 36.2 | 20.77 |
| Zm00001d042538_P001 | Maize | plastid | 36.2 | 19.8 |
Protein Annotations
| MapMan:22.1.5.4 | Gene3D:3.30.450.60 | InterPro:APS3 | InterPro:AP_complex_ssu | InterPro:AP_mu_sigma_su | InterPro:Clathrin_sm-chain_CS |
| GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0008565 | GO:GO:0015031 | GO:GO:0016020 |
| GO:GO:0016192 | GO:GO:0030117 | GO:GO:0030123 | InterPro:Longin-like_dom_sf | UniProt:M0ZVW9 | PFAM:PF01217 |
| EnsemblPlantsGene:PGSC0003DMG400003596 | PGSC:PGSC0003DMG400003596 | EnsemblPlants:PGSC0003DMT400009269 | PIRSF:PIRSF015588 | ScanProsite:PS00989 | PANTHER:PTHR11753 |
| PANTHER:PTHR11753:SF2 | SUPFAM:SSF64356 | UniParc:UPI0002968163 | : | : | : |
Description
AP-3 complex subunit sigma [Source:PGSC_GENE;Acc:PGSC0003DMG400003596]
Coordinates
chr2:+:40489349..40491690
Molecular Weight (calculated)
18750.6 Da
IEP (calculated)
4.997
GRAVY (calculated)
0.075
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MVINTFGKPR LSKFYEFQPV EKQQELIRHV YAVLSNRPDN VSNFIRSLGT IFSPDTRLVY KHYATLYFVF LFDNSENELA MLDLIQAVFV ETLDKCFKSV
101: CELDVVFNYS KMHIILDEII LGGQVLETDS VEVVRAVEEI SKVESTTSAG TLINKSIPSW WAR
101: CELDVVFNYS KMHIILDEII LGGQVLETDS VEVVRAVEEI SKVESTTSAG TLINKSIPSW WAR
001: MIKAVMMMNT QGKPRLAKFY DYLPVEKQQE LIRGVFSVLC SRPENVSNFL EIESLFGPDS RLVYKHYATL YFVLVFDGSE NELAMLDLIQ VLVETLDKCF
101: SNVCELDIVF NYSKMHAVLD EIVFGGQVLE TSSAEVMKAV EEISKLEAAS NSISLVPKSV SGWRGR
101: SNVCELDIVF NYSKMHAVLD EIVFGGQVLE TSSAEVMKAV EEISKLEAAS NSISLVPKSV SGWRGR
Arabidopsis Description
AP-3 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ37]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.