CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90681	Canola	cytosol	78.2	98.8
AT3G50860.1	Thale cress	cytosol	74.88	95.18
VIT_04s0023g01770.t01	Wine grape	cytosol, mitochondrion	63.98	81.82
KRH69924	Soybean	cytosol, mitochondrion	61.61	78.31
KRH08275	Soybean	cytosol, mitochondrion	60.66	77.11
GSMUA_Achr8P26380_001	Banana	cytosol, mitochondrion	58.29	74.1
Solyc02g085240.2.1	Tomato	cytosol	55.92	70.66
PGSC0003DMT400009269	Potato	cytosol	52.13	67.48
TraesCS4D01G235600.1	Wheat	cytosol	52.61	66.87
TraesCS4B01G234400.1	Wheat	cytosol	52.61	66.87
TraesCS4A01G078400.1	Wheat	cytosol	52.61	66.87
Os03t0228400-01	Rice	cytosol, mitochondrion	51.18	65.06
EER92601	Sorghum	mitochondrion	50.71	64.46
Os01t0353600-00	Rice	mitochondrion	49.29	62.65
Zm00001d047992_P006	Maize	cytosol, mitochondrion	49.76	59.66
Zm00001d004311_P001	Maize	extracellular	22.75	59.26
CDX73778	Canola	cytosol, endoplasmic reticulum, nucleus	38.39	57.04
Zm00001d010247_P001	Maize	extracellular	24.17	47.22
OQU84502	Sorghum	mitochondrion	46.92	46.7
GSMUA_AchrUn_...	Banana	cytosol	36.49	42.78
CDY63352	Canola	cytosol, mitochondrion	27.49	40.0
CDY70589	Canola	cytosol	21.8	38.33
CDY52072	Canola	cytosol	27.49	37.66
CDY35888	Canola	mitochondrion	25.59	37.5
CDX82722	Canola	mitochondrion	25.59	37.5
CDY48729	Canola	mitochondrion	25.12	37.06
CDY03335	Canola	mitochondrion	25.12	37.06
CDX71554	Canola	cytosol	20.85	36.67
CDY06725	Canola	cytosol	27.01	36.31
CDY69066	Canola	cytosol	25.59	30.51
CDX69137	Canola	extracellular	24.17	27.57
CDX75500	Canola	cytosol	24.64	25.62
Zm00001d008712_P001	Maize	extracellular	26.07	25.23
CDY50208	Canola	extracellular, plasma membrane	25.12	24.65
Zm00001d041448_P001	Maize	plastid	27.96	20.77
Zm00001d042538_P001	Maize	plastid	27.96	19.8

Protein Annotations

MapMan:22.1.5.4	Gene3D:3.30.450.60	GO:A0A078GV18	UniProt:A0A078GV18	InterPro:APS3	InterPro:AP_complex_ssu
InterPro:AP_mu_sigma_su	EnsemblPlants:CDY28984	ProteinID:CDY28984	ProteinID:CDY28984.1	InterPro:Clathrin_sm-chain_CS	ncoils:Coil
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	GO:GO:0030117	GO:GO:0030123	EnsemblPlantsGene:GSBRNA2T00041703001	InterPro:Longin-like_dom_sf	PFAM:PF01217
PIRSF:PIRSF015588	ScanProsite:PS00989	PANTHER:PTHR11753	PANTHER:PTHR11753:SF2	SUPFAM:SSF64356	UniParc:UPI0004EE0200

Description

BnaC07g31900DBnaC07g31900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GV18]

Coordinates

chrLK032229:+:24117..25788

Molecular Weight (calculated)

23597.8 Da

IEP (calculated)

6.948

GRAVY (calculated)

0.015

Length

211 amino acids

Sequence
(BLAST)

001: MKVTTRGSFP ISYEGLRVKQ KVRGGVHHQG PNEIGVLGVS GIVKMIKAVM MMNTQGKPRL AKFYDFLPVE KQQELIRGVF SVLSSRPENV SNFLEIDSLF
101: GPDSRLVYKH YATLYFVLVF DGSENELAML DLIQVLVETL DKCFSNVCEL DIVFNYSKMH TVLDEIVFGG QVLETRSDEI MKAVEEISKL EAASNSISLV
201: PKSVSGWRGG R

Best Arabidopsis Sequence Match ( AT3G50860.1 )
(BLAST)

001: MIKAVMMMNT QGKPRLAKFY DYLPVEKQQE LIRGVFSVLC SRPENVSNFL EIESLFGPDS RLVYKHYATL YFVLVFDGSE NELAMLDLIQ VLVETLDKCF
101: SNVCELDIVF NYSKMHAVLD EIVFGGQVLE TSSAEVMKAV EEISKLEAAS NSISLVPKSV SGWRGR

Arabidopsis Description

AP-3 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.