CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
mitochondrion 1
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G35410.2	Thale cress	mitochondrion	81.08	92.59
CDY69066	Canola	cytosol	82.7	86.44
TraesCS5D01G430000.1	Wheat	cytosol, mitochondrion	75.14	86.34
TraesCS5B01G423600.1	Wheat	cytosol, mitochondrion	75.14	86.34
Os03t0783700-00	Rice	plasma membrane	75.14	86.34
Bra011613.1-P	Field mustard	cytosol	94.05	85.71
CDX75500	Canola	cytosol	94.05	85.71
KRH17634	Soybean	endoplasmic reticulum	72.97	83.85
KRG90038	Soybean	cytosol, mitochondrion	72.97	83.85
HORVU5Hr1G102930.4	Barley	extracellular, golgi	75.68	77.78
HORVU5Hr1G102770.1	Barley	extracellular, golgi	75.68	77.78
Zm00001d013128_P004	Maize	cytosol, plastid	72.97	71.43
CDY50208	Canola	extracellular, plasma membrane	82.7	71.16
GSMUA_Achr8P15550_001	Banana	cytosol, mitochondrion	71.35	67.35
GSMUA_Achr3P24130_001	Banana	cytosol, mitochondrion	75.14	66.19
KXG37427	Sorghum	cytosol, nucleus, plastid	76.22	52.61
CDY63352	Canola	cytosol, mitochondrion	38.92	49.66
GSMUA_Achr9P11170_001	Banana	extracellular	72.97	49.63
CDY70589	Canola	cytosol	31.89	49.17
CDX71554	Canola	cytosol	30.81	47.5
Zm00001d034337_P005	Maize	cytosol	79.46	46.82
CDY52072	Canola	cytosol	38.92	46.75
CDY06725	Canola	cytosol	38.92	45.86
CDX82722	Canola	mitochondrion	31.89	40.97
CDY35888	Canola	mitochondrion	31.89	40.97
CDY48729	Canola	mitochondrion	31.35	40.56
CDY03335	Canola	mitochondrion	31.35	40.56
CDX90681	Canola	cytosol	28.11	31.14
CDY28984	Canola	cytosol	27.57	24.17
CDX73778	Canola	cytosol, endoplasmic reticulum, nucleus	17.3	22.54

Protein Annotations

MapMan:22.1.2.4	Gene3D:3.30.450.60	GO:A0A078BXQ4	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su	EnsemblPlants:CDX69137
ProteinID:CDX69137	ProteinID:CDX69137.1	InterPro:Clathrin_sm-chain_CS	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	GO:GO:0030117	EnsemblPlantsGene:GSBRNA2T00130924001	InterPro:Longin-like_dom_sf	PFAM:PF01217	PIRSF:PIRSF015588
ScanProsite:PS00989	PANTHER:PTHR11753	PANTHER:PTHR11753:SF32	SUPFAM:SSF64356	UniParc:UPI0004EF0E60	:

Description

BnaC01g03160D

Coordinates

chrLK031789:+:3129023..3130417

Molecular Weight (calculated)

21396.0 Da

IEP (calculated)

7.096

GRAVY (calculated)

0.014

Length

185 amino acids

Sequence
(BLAST)

001: MDRLMSLYKV ATFLSEHSCL ASGFGSIHFV LLVSRQGKVR LTKWYSPYTQ KERSKVIREL SGVILNRGPK LCNFIEWRGY KVVYKRYASL YFCMCIDAED
101: NELEVLEIIH HYVEILDRYF GSVCELDLIF HFHKAYYILD ELLIAGELQE SSKKTVARII SAQDQMVEAA KEEAGSISYI IAQTT

Best Arabidopsis Sequence Match ( AT2G17380.1 )
(BLAST)

001: MIHFVLLVSR QGKVRLTKWY SPYTQKERSK VIRELSGVIL NRGPKLCNFI EWRGYKVVYK RYASLYFCMC IDEADNELEV LEIIHHYVEI LDRYFGSVCE
101: LDLIFNFHKA YYILDELLIA GELQESSKKT VARIISAQDQ LVEVAKEEAS SISNIIAQAT K

Arabidopsis Description

AAP19-1AP-1 complex subunit sigma-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LEZ8]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.