CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G47830.1	Thale cress	mitochondrion	95.0	80.28
EES16862	Sorghum	cytosol	94.17	79.58
Os12t0207300-01	Rice	plasma membrane	94.17	79.58
Zm00001d007270_P001	Maize	mitochondrion	93.33	78.87
EES08264	Sorghum	mitochondrion	93.33	78.87
CDY63352	Canola	cytosol, mitochondrion	95.0	78.62
Solyc04g081410.2.1	Tomato	plastid	92.5	78.17
PGSC0003DMT400025529	Potato	mitochondrion	92.5	78.17
TraesCS5D01G119700.1	Wheat	mitochondrion	91.67	77.46
TraesCS5B01G113000.1	Wheat	cytosol	91.67	77.46
HORVU5Hr1G033310.1	Barley	mitochondrion	91.67	77.46
KRH17427	Soybean	mitochondrion	91.67	77.46
KRH05944	Soybean	mitochondrion	91.67	77.46
CDX71554	Canola	cytosol	75.83	75.83
CDY06725	Canola	cytosol	98.33	75.16
Bra015600.1-P	Field mustard	cytosol, mitochondrion	98.33	75.16
CDY52072	Canola	cytosol	95.0	74.03
TraesCS5A01G112300.2	Wheat	mitochondrion	86.67	72.73
Zm00001d041778_P006	Maize	cytosol, mitochondrion	85.0	65.38
GSMUA_Achr8P19280_001	Banana	cytosol	91.67	65.09
VIT_04s0023g03340.t01	Wine grape	cytosol	91.67	63.95
VIT_18s0001g14240.t01	Wine grape	cytosol	91.67	58.51
CDY35888	Canola	mitochondrion	41.67	34.72
CDX82722	Canola	mitochondrion	41.67	34.72
CDY69066	Canola	cytosol	50.83	34.46
CDY48729	Canola	mitochondrion	40.83	34.27
CDY03335	Canola	mitochondrion	40.83	34.27
CDX69137	Canola	extracellular	49.17	31.89
CDX75500	Canola	cytosol	50.0	29.56
CDY50208	Canola	extracellular, plasma membrane	50.83	28.37
CDX90681	Canola	cytosol	36.67	26.35
CDX73778	Canola	cytosol, endoplasmic reticulum, nucleus	26.67	22.54
CDY28984	Canola	cytosol	38.33	21.8

Protein Annotations

Gene3D:3.30.450.60	MapMan:35.1	GO:A0A078JUU0	UniProt:A0A078JUU0	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su
EnsemblPlants:CDY70589	ProteinID:CDY70589	ProteinID:CDY70589.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565
GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	EnsemblPlantsGene:GSBRNA2T00004611001	InterPro:Longin-like_dom_sf	PFAM:PF01217
PIRSF:PIRSF015588	PANTHER:PTHR11753	PANTHER:PTHR11753:SF17	SUPFAM:SSF64356	UniParc:UPI0004EE41C2	:

Description

BnaC06g40760DBnaC06g40760D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JUU0]

Coordinates

chrLK042616:-:2140..3186

Molecular Weight (calculated)

14365.3 Da

IEP (calculated)

5.567

GRAVY (calculated)

-0.049

Length

120 amino acids

Sequence
(BLAST)

001: SKNTEKHKVE YEVHRLVVNR DAKFTNFVEF RTHKVIYRRY AGLFFSVCVD ITDNELAYLE CIHLFVEILD HFFSNVCELD LVFNFHKVYL ILDEFILAGE
101: LQETSKRAII ERMSELEKLE

Best Arabidopsis Sequence Match ( AT1G47830.1 )
(BLAST)

001: MIRFILLQNR QGKTRLAKYY VPLEESEKHK VEYEVHRLVV NRDAKFTNFV EFRTHKVIYR RYAGLFFSVC VDITDNELAY LESIHLFVEI LDHFFSNVCE
101: LDLVFNFHKV YLILDEFILA GELQETSKRA IIERMSELEK LQ

Arabidopsis Description

AP17AP-2 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:Q84WL9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.