Factsheet for GSMUA_Achr8P19280_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
plasma membrane 1
golgi 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400025529	Potato	mitochondrion	81.66	97.18
Solyc04g081410.2.1	Tomato	plastid	81.66	97.18
Os12t0207300-01	Rice	plasma membrane	81.07	96.48
EES16862	Sorghum	cytosol	81.07	96.48
Zm00001d007270_P001	Maize	mitochondrion	79.88	95.07
KRH17427	Soybean	mitochondrion	79.88	95.07
KRH05944	Soybean	mitochondrion	79.88	95.07
EES08264	Sorghum	mitochondrion	79.88	95.07
TraesCS5D01G119700.1	Wheat	mitochondrion	78.7	93.66
HORVU5Hr1G033310.1	Barley	mitochondrion	78.7	93.66
AT1G47830.1	Thale cress	mitochondrion	78.7	93.66
CDY63352	Canola	cytosol, mitochondrion	79.88	93.1
TraesCS5B01G113000.1	Wheat	cytosol	78.11	92.96
CDY70589	Canola	cytosol	65.09	91.67
TraesCS5A01G112300.2	Wheat	mitochondrion	75.74	89.51
CDY52072	Canola	cytosol	80.47	88.31
Bra027439.1-P	Field mustard	cytosol	80.47	88.31
CDY06725	Canola	cytosol	79.88	85.99
Bra015600.1-P	Field mustard	cytosol, mitochondrion	79.88	85.99
VIT_04s0023g03340.t01	Wine grape	cytosol	81.07	79.65
Zm00001d041778_P006	Maize	cytosol, mitochondrion	73.37	79.49
CDX71554	Canola	cytosol	55.62	78.33
VIT_18s0001g14240.t01	Wine grape	cytosol	82.84	74.47
GSMUA_Achr4P10500_001	Banana	mitochondrion	39.05	45.83
GSMUA_Achr8P15550_001	Banana	cytosol, mitochondrion	43.2	37.24
GSMUA_Achr3P24130_001	Banana	cytosol, mitochondrion	45.56	36.67
GSMUA_Achr8P26380_001	Banana	cytosol, mitochondrion	33.73	34.34
GSMUA_Achr9P11170_001	Banana	extracellular	44.38	27.57
GSMUA_AchrUn_...	Banana	cytosol	20.71	19.44

Protein Annotations

MapMan:22.1.3.4	Gene3D:3.30.450.60	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0008565	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	EnsemblPlantsGene:GSMUA_Achr8G19280_001	EnsemblPlants:GSMUA_Achr8P19280_001
EnsemblPlants:GSMUA_Achr8T19280_001	InterPro:Longin-like_dom_sf	UniProt:M0TRT1	PFAM:PF01217	PIRSF:PIRSF015588	PANTHER:PTHR11753
PANTHER:PTHR11753:SF17	SUPFAM:SSF64356	UniParc:UPI000296DFEC	:	:	:

Description

AP-2 complex subunit sigma [Source:GMGC_GENE;Acc:GSMUA_Achr8G19280_001]

Coordinates

chr8:+:24273865..24279138

Molecular Weight (calculated)

20328.6 Da

IEP (calculated)

6.396

GRAVY (calculated)

-0.224

Length

169 amino acids

Sequence
(BLAST)

001: MYYDINIKAR RKTHQLFLSC ALSGDDEMIR FILLQNRQGK TRLAKYYIPL EESEKHKVEY EVHRLVVNRD PKYTNFVEFR THKVIYRRYA GLFFSMCVDI
101: TDNELAYLEC IHLFVEILDH FFSNVCELDL VFNFHKVYLI LDEFILAGEI QETSKRAIIE RMGELEKQE

Best Arabidopsis Sequence Match ( AT1G47830.1 )
(BLAST)

001: MIRFILLQNR QGKTRLAKYY VPLEESEKHK VEYEVHRLVV NRDAKFTNFV EFRTHKVIYR RYAGLFFSVC VDITDNELAY LESIHLFVEI LDHFFSNVCE
101: LDLVFNFHKV YLILDEFILA GELQETSKRA IIERMSELEK LQ

Arabidopsis Description

AP17AP-2 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:Q84WL9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.