Factsheet for Bra027439.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3
plasma membrane 2
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	golgi, plasma membrane
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52072	Canola	cytosol	100.0	100.0
EES16862	Sorghum	cytosol	88.96	96.48
Os12t0207300-01	Rice	plasma membrane	88.96	96.48
Zm00001d007270_P001	Maize	mitochondrion	88.31	95.77
Solyc04g081410.2.1	Tomato	plastid	88.31	95.77
EES08264	Sorghum	mitochondrion	88.31	95.77
PGSC0003DMT400025529	Potato	mitochondrion	88.31	95.77
TraesCS5B01G113000.1	Wheat	cytosol	87.66	95.07
KRH05944	Soybean	mitochondrion	87.66	95.07
TraesCS5D01G119700.1	Wheat	mitochondrion	87.01	94.37
HORVU5Hr1G033310.1	Barley	mitochondrion	87.01	94.37
KRH17427	Soybean	mitochondrion	87.01	94.37
TraesCS5A01G112300.2	Wheat	mitochondrion	83.12	89.51
Bra015600.1-P	Field mustard	cytosol, mitochondrion	90.91	89.17
GSMUA_Achr8P19280_001	Banana	cytosol	88.31	80.47
Zm00001d041778_P006	Maize	cytosol, mitochondrion	81.17	80.13
VIT_04s0023g03340.t01	Wine grape	cytosol	88.96	79.65
VIT_18s0001g14240.t01	Wine grape	cytosol	89.61	73.4
Bra002054.1-P	Field mustard	cytosol, mitochondrion	48.05	45.96
Bra039020.1-P	Field mustard	mitochondrion	41.56	44.76
Bra036702.1-P	Field mustard	mitochondrion	40.91	44.06
Bra011613.1-P	Field mustard	cytosol	47.4	35.96
Bra012884.1-P	Field mustard	cytosol	37.01	34.13
Bra036855.1-P	Field mustard	cytosol	16.88	28.89

Protein Annotations

MapMan:22.1.3.4	Gene3D:3.30.450.60	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su	EnsemblPlantsGene:Bra027439	EnsemblPlants:Bra027439.1
EnsemblPlants:Bra027439.1-P	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	InterPro:Longin-like_dom_sf	UniProt:M4EF77	PFAM:PF01217	PIRSF:PIRSF015588	PANTHER:PTHR11753
PANTHER:PTHR11753:SF17	SUPFAM:SSF64356	UniParc:UPI000254216F	:	:	:

Description

AT1G47830 (E=3e-075) | clathrin coat assembly protein, putative

Coordinates

chrA09:-:14286793..14288067

Molecular Weight (calculated)

18507.4 Da

IEP (calculated)

5.943

GRAVY (calculated)

-0.063

Length

154 amino acids

Sequence
(BLAST)

001: MSEISFWSNL SLQIRFILLQ NRQGKTRLAK YYVPLEESEK HKVEYEVHRL VVNRDSKFTN FVEFRTHKVI YRRYAGLFFS LCVDITDNEL AYLECIHLFV
101: EILDHFFSNV CELDLVFNFH KVYLILDEFI LAGELQETSK RAIIERMSEL EKLE

Best Arabidopsis Sequence Match ( AT1G47830.1 )
(BLAST)

001: MIRFILLQNR QGKTRLAKYY VPLEESEKHK VEYEVHRLVV NRDAKFTNFV EFRTHKVIYR RYAGLFFSVC VDITDNELAY LESIHLFVEI LDHFFSNVCE
101: LDLVFNFHKV YLILDEFILA GELQETSKRA IIERMSELEK LQ

Arabidopsis Description

AP17AP-2 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:Q84WL9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.