CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015600.1-P	Field mustard	cytosol, mitochondrion	99.36	99.36
CDY70589	Canola	cytosol	75.16	98.33
AT1G47830.1	Thale cress	mitochondrion	88.53	97.89
Os12t0207300-01	Rice	plasma membrane	87.26	96.48
EES16862	Sorghum	cytosol	87.26	96.48
CDY63352	Canola	cytosol, mitochondrion	88.53	95.86
Zm00001d007270_P001	Maize	mitochondrion	86.62	95.77
EES08264	Sorghum	mitochondrion	86.62	95.77
Solyc04g081410.2.1	Tomato	plastid	85.99	95.07
PGSC0003DMT400025529	Potato	mitochondrion	85.99	95.07
TraesCS5D01G119700.1	Wheat	mitochondrion	85.35	94.37
TraesCS5B01G113000.1	Wheat	cytosol	85.35	94.37
KRH17427	Soybean	mitochondrion	85.35	94.37
KRH05944	Soybean	mitochondrion	85.35	94.37
HORVU5Hr1G033310.1	Barley	mitochondrion	85.35	94.37
CDY52072	Canola	cytosol	89.17	90.91
TraesCS5A01G112300.2	Wheat	mitochondrion	81.53	89.51
Zm00001d041778_P006	Maize	cytosol, mitochondrion	79.62	80.13
CDX71554	Canola	cytosol	61.15	80.0
GSMUA_Achr8P19280_001	Banana	cytosol	85.99	79.88
VIT_04s0023g03340.t01	Wine grape	cytosol	85.35	77.91
VIT_18s0001g14240.t01	Wine grape	cytosol	87.9	73.4
CDY35888	Canola	mitochondrion	41.4	45.14
CDX82722	Canola	mitochondrion	41.4	45.14
CDY48729	Canola	mitochondrion	40.76	44.76
CDY03335	Canola	mitochondrion	40.76	44.76
CDY69066	Canola	cytosol	47.13	41.81
CDX69137	Canola	extracellular	45.86	38.92
CDX75500	Canola	cytosol	46.5	35.96
CDY50208	Canola	extracellular, plasma membrane	47.13	34.42
CDX90681	Canola	cytosol	35.03	32.93
CDY28984	Canola	cytosol	36.31	27.01
CDX73778	Canola	cytosol, endoplasmic reticulum, nucleus	20.38	22.54

Protein Annotations

EnsemblPlants:CDY06725	EnsemblPlantsGene:GSBRNA2T00122912001	Gene3D:3.30.450.60	GO:A0A078EXF1	GO:GO:0006810	GO:GO:0008150
GO:GO:0015031	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su	InterPro:Longin-like_dom_sf	PANTHER:PTHR11753	PANTHER:PTHR11753:SF17
PFAM:PF01217	PIRSF:PIRSF015588	ProteinID:CDY06725	ProteinID:CDY06725.1	SUPFAM:SSF64356	UniParc:UPI0004EE2A36
MapMan:22.1.3.4	:	:	:	:	:

Description

BnaA10g05040D

Coordinates

chrLK031972:+:523381..524619

Molecular Weight (calculated)

18775.0 Da

IEP (calculated)

6.785

GRAVY (calculated)

0.035

Length

157 amino acids

Sequence
(BLAST)

001: MILKICDIVR IPPLSKIRFI LLQNRQGKTR LAKYYVPLEE SEKHKVEYEV HRLVVNRDAK FTNFVEFRTH KVIYRRYAGL FFSVCVDITD NELAYLECIH
101: LFVEILDHFF SNVCELDLVF NFHKVYLILD EFILAGELQE TSKRAIIERM SELEKLE

Best Arabidopsis Sequence Match ( AT1G47830.1 )
(BLAST)

001: MIRFILLQNR QGKTRLAKYY VPLEESEKHK VEYEVHRLVV NRDAKFTNFV EFRTHKVIYR RYAGLFFSVC VDITDNELAY LESIHLFVEI LDHFFSNVCE
101: LDLVFNFHKV YLILDEFILA GELQETSKRA IIERMSELEK LQ

Arabidopsis Description

AP17AP-2 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:Q84WL9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.