Factsheet for TraesCS5B01G423600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 4
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G365600.1
TraesCS1B01G383200.1
TraesCS1D01G371000.1
TraesCS3A01G254200.2
TraesCS3B01G286200.2
TraesCS3D01G255100.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17380.1	TraesCS1A01G365600.1	AT1G60780.1	23543752
AT2G17380.1	TraesCS1B01G383200.1	AT1G60780.1	23543752
AT2G17380.1	TraesCS1D01G371000.1	AT1G60780.1	23543752
AT2G17380.1	TraesCS3A01G254200.2	AT1G60780.1	23543752
AT2G17380.1	TraesCS3B01G286200.2	AT1G60780.1	23543752
AT2G17380.1	TraesCS3D01G255100.2	AT1G60780.1	23543752

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G430000.1	Wheat	cytosol, mitochondrion	100.0	100.0
Os03t0783700-00	Rice	plasma membrane	96.27	96.27
Solyc11g005220.1.1	Tomato	nucleus	91.93	91.93
PGSC0003DMT400015461	Potato	cytosol, mitochondrion	91.93	91.93
KRH17634	Soybean	endoplasmic reticulum	90.06	90.06
KRG90038	Soybean	cytosol, mitochondrion	90.06	90.06
HORVU5Hr1G102930.4	Barley	extracellular, golgi	99.38	88.89
HORVU5Hr1G102770.1	Barley	extracellular, golgi	99.38	88.89
Bra002054.1-P	Field mustard	cytosol, mitochondrion	88.82	88.82
AT2G17380.1	Thale cress	cytosol, mitochondrion	88.2	88.2
AT4G35410.2	Thale cress	mitochondrion	87.58	87.04
VIT_01s0127g00810.t01	Wine grape	golgi	93.79	84.83
VIT_16s0050g00660.t01	Wine grape	golgi	92.55	84.18
CDY69066	Canola	cytosol	88.82	80.79
Zm00001d013128_P004	Maize	cytosol, plastid	94.41	80.42
PGSC0003DMT400015459	Potato	cytosol	67.7	76.22
CDX69137	Canola	extracellular	86.34	75.14
KRH73467	Soybean	cytosol, mitochondrion	78.26	74.12
GSMUA_Achr8P15550_001	Banana	cytosol, mitochondrion	86.96	71.43
GSMUA_Achr3P24130_001	Banana	cytosol, mitochondrion	92.55	70.95
CDX75500	Canola	cytosol	86.96	68.97
Bra011613.1-P	Field mustard	cytosol	86.96	68.97
CDY50208	Canola	extracellular, plasma membrane	88.2	66.05
KXG37427	Sorghum	cytosol, nucleus, plastid	98.14	58.96
TraesCS5B01G113000.1	Wheat	cytosol	47.2	53.52
GSMUA_Achr9P11170_001	Banana	extracellular	89.44	52.94
Zm00001d034337_P005	Maize	cytosol	97.52	50.0
TraesCS6B01G140700.1	Wheat	cytosol, mitochondrion	38.51	43.36
TraesCS4B01G234400.1	Wheat	cytosol	36.02	34.94

Protein Annotations

MapMan:22.1.2.4	Gene3D:3.30.450.60	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su	InterPro:Clathrin_sm-chain_CS	ncoils:Coil
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030117	InterPro:Longin-like_dom_sf
PFAM:PF01217	PIRSF:PIRSF015588	ScanProsite:PS00989	PANTHER:PTHR11753	PANTHER:PTHR11753:SF32	SUPFAM:SSF64356
EnsemblPlantsGene:TraesCS5B01G423600	EnsemblPlants:TraesCS5B01G423600.1	:	:	:	:

Description

No Description!

Coordinates

chr5B:-:599956623..599959313

Molecular Weight (calculated)

18649.7 Da

IEP (calculated)

7.379

GRAVY (calculated)

-0.011

Length

161 amino acids

Sequence
(BLAST)

001: MINFVLLISR QGKVRLTKWY SPYTQKERTK VIRELSGLIL TRGPKLCNFV EWRGYKVVYR RYASLYFCMC IDADDNELEV LEIIHHFVEI LDRYFGSVCE
101: LDLIFNFHKA YYVLDEILIS GELQESSKKN VARLIAAQDS LVEAAKEEAG SISNIIAQAT K

Best Arabidopsis Sequence Match ( AT2G17380.1 )
(BLAST)

001: MIHFVLLVSR QGKVRLTKWY SPYTQKERSK VIRELSGVIL NRGPKLCNFI EWRGYKVVYK RYASLYFCMC IDEADNELEV LEIIHHYVEI LDRYFGSVCE
101: LDLIFNFHKA YYILDELLIA GELQESSKKT VARIISAQDQ LVEVAKEEAS SISNIIAQAT K

Arabidopsis Description

AAP19-1AP-1 complex subunit sigma-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LEZ8]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.