Factsheet for VIT_16s0050g00660.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
cytosol 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	golgi, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015461	Potato	cytosol, mitochondrion	86.44	95.03
Solyc11g005220.1.1	Tomato	nucleus	86.44	95.03
TraesCS5D01G430000.1	Wheat	cytosol, mitochondrion	84.18	92.55
Os03t0783700-00	Rice	plasma membrane	84.18	92.55
TraesCS5B01G423600.1	Wheat	cytosol, mitochondrion	84.18	92.55
VIT_01s0127g00810.t01	Wine grape	golgi	91.53	91.01
HORVU5Hr1G102770.1	Barley	extracellular, golgi	87.01	85.56
HORVU5Hr1G102930.4	Barley	extracellular, golgi	87.01	85.56
Zm00001d013128_P004	Maize	cytosol, plastid	83.05	77.78
GSMUA_Achr8P15550_001	Banana	cytosol, mitochondrion	80.23	72.45
GSMUA_Achr3P24130_001	Banana	cytosol, mitochondrion	84.18	70.95
KXG37427	Sorghum	cytosol, nucleus, plastid	86.44	57.09
GSMUA_Achr9P11170_001	Banana	extracellular	82.49	53.68
Zm00001d034337_P005	Maize	cytosol	88.14	49.68
VIT_04s0023g03340.t01	Wine grape	cytosol	41.81	43.02
VIT_11s0016g02840.t01	Wine grape	cytosol, mitochondrion	31.07	40.44
VIT_18s0001g14240.t01	Wine grape	cytosol	41.24	38.83
VIT_04s0023g01770.t01	Wine grape	cytosol, mitochondrion	33.33	35.76

Protein Annotations

EntrezGene:100257590	wikigene:100257590	MapMan:22.1.2.4	Gene3D:3.30.450.60	EMBL:AM478777	InterPro:AP_complex_ssu
InterPro:AP_mu_sigma_su	ProteinID:CAN79566	ProteinID:CAN79566.1	ProteinID:CCB47865	ProteinID:CCB47865.1	InterPro:Clathrin_sm-chain_CS
UniProt:F6H6L3	EMBL:FN595243	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565
GO:GO:0015031	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	GO:GO:0030117	EntrezGene:LOC100257590
wikigene:LOC100257590	InterPro:Longin-like_dom_sf	PFAM:PF01217	PIRSF:PIRSF015588	ScanProsite:PS00989	PANTHER:PTHR11753
PANTHER:PTHR11753:SF32	SUPFAM:SSF64356	TIGR:TC59848	TMHMM:TMhelix	UniParc:UPI0002108156	ArrayExpress:VIT_16s0050g00660
EnsemblPlantsGene:VIT_16s0050g00660	EnsemblPlants:VIT_16s0050g00660.t01	unigene:Vvi.1540	RefSeq:XP_002269251	RefSeq:XP_002269251.1	:

Description

AP complex subunit sigma [Source:UniProtKB/TrEMBL;Acc:F6H6L3]

Coordinates

chr16:+:17607779..17614038

Molecular Weight (calculated)

20668.3 Da

IEP (calculated)

8.295

GRAVY (calculated)

0.059

Length

177 amino acids

Sequence
(BLAST)

001: MYLKFGIFNI LFLAKLHIHF VLLISRQGKV RLTKWYSPYT QKERTKVIRE LSGVILTRGP KLCNFVEWRG YKVVYKRYAS LYFCMCIDQD DNELEVLEII
101: HHYVEILDRY FGSVCELDLI FNFHKAYYIL DELLIAGELQ ESSKKTVARL IAAQDSLVET AKEEASSISN IIAQATK

Best Arabidopsis Sequence Match ( AT2G17380.1 )
(BLAST)

001: MIHFVLLVSR QGKVRLTKWY SPYTQKERSK VIRELSGVIL NRGPKLCNFI EWRGYKVVYK RYASLYFCMC IDEADNELEV LEIIHHYVEI LDRYFGSVCE
101: LDLIFNFHKA YYILDELLIA GELQESSKKT VARIISAQDQ LVEVAKEEAS SISNIIAQAT K

Arabidopsis Description

AAP19-1AP-1 complex subunit sigma-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LEZ8]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.