CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 5
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034595_P001	Maize	cytosol	85.71	77.53
EES08264	Sorghum	mitochondrion	44.72	50.7
EES16862	Sorghum	cytosol	44.72	50.7
KXG37427	Sorghum	cytosol, nucleus, plastid	80.75	48.51
KXG25094	Sorghum	cytosol, mitochondrion	34.16	38.46
EER92601	Sorghum	mitochondrion	34.78	33.73
OQU84502	Sorghum	mitochondrion	33.54	25.47

Protein Annotations

MapMan:22.1.2.4	Gene3D:3.30.450.60	EntrezGene:8057396	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su	UniProt:C5WW02
InterPro:Clathrin_sm-chain_CS	ncoils:Coil	EnsemblPlants:EER93221	ProteinID:EER93221	ProteinID:EER93221.1	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192
GO:GO:0030117	InterPro:Longin-like_dom_sf	PFAM:PF01217	PIRSF:PIRSF015588	ScanProsite:PS00989	PANTHER:PTHR11753
PANTHER:PTHR11753:SF32	EnsemblPlantsGene:SORBI_3001G041600	SUPFAM:SSF64356	UniParc:UPI0001A829FB	RefSeq:XP_002466223.1	:

Description

hypothetical protein

Coordinates

chr1:-:3096385..3098752

Molecular Weight (calculated)

18791.0 Da

IEP (calculated)

8.587

GRAVY (calculated)

-0.052

Length

161 amino acids

Sequence
(BLAST)

001: MIHFVLLISR QGKVRLTKWY TPYPQKQRSK IIKEISTLVL TRGPKLCNFV DWQGYRVVYK RYASLYFCMC IDPADNELET LQIIHHYVEI LDRYFGNVCE
101: LDLIFNFHKA YFILDEILIA GELQESNKKS VLRLVTTQDA LVEAAKEEAG SLRNIIAQAT K

Best Arabidopsis Sequence Match ( AT2G17380.1 )
(BLAST)

001: MIHFVLLVSR QGKVRLTKWY SPYTQKERSK VIRELSGVIL NRGPKLCNFI EWRGYKVVYK RYASLYFCMC IDEADNELEV LEIIHHYVEI LDRYFGSVCE
101: LDLIFNFHKA YYILDELLIA GELQESSKKT VARIISAQDQ LVEVAKEEAS SISNIIAQAT K

Arabidopsis Description

AAP19-1AP-1 complex subunit sigma-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LEZ8]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.