Factsheet for Os03t0112400-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0793100-01
Os03t0355600-01
Os04t0584800-01
Os08t0243900-01
Os11t0104866-00	plasma membrane
Os11t0104900-00	plasma membrane
Os11t0175900-01
Os12t0104766-00	plasma membrane
Os12t0104800-01	plasma membrane
Os12t0207300-01	golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G22770.1	Os12t0207300-01	AT1G47830.1	23975899
AT5G22770.1	Os12t0207300-01	AT1G47830.1	23975899
AT5G22770.1	Os02t0793100-01	AT3G01780.1	24529374
AT5G22770.1	Os11t0175900-01	AT3G01780.1	24529374
AT5G22770.1	Os11t0104866-00	AT3G11130.1	23975898
AT5G22770.1	Os11t0104900-00	AT3G11130.1	23975898
AT5G22770.1	Os12t0104766-00	AT3G11130.1	23975898
AT5G22770.1	Os12t0104800-01	AT3G11130.1	23975898
AT5G22770.1	Os03t0355600-01	AT4G23460.1	23975899
AT5G22770.1	Os08t0243900-01	AT5G57460.1	24529374
AT5G22770.1	Os04t0584800-01	AT5G65960.1	23975899

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g066770.1.1	Tomato	cytosol	66.01	23.27
CDY20344	Canola	cytosol	65.36	15.5
KXG40365	Sorghum	cytosol	86.27	12.64
TraesCS5A01G557300.1	Wheat	cytosol	81.7	12.0
TraesCS4B01G395700.3	Wheat	cytosol, unclear	81.05	11.91
KRH25154	Soybean	cytosol	31.37	11.79
Zm00001d048511_P008	Maize	cytosol	78.43	11.27
Zm00001d027333_P018	Maize	cytosol	78.43	11.24
GSMUA_Achr1P01770_001	Banana	cytosol	68.63	10.24
CDY29719	Canola	cytosol	64.71	10.09
GSMUA_Achr5P15250_001	Banana	cytosol	64.71	9.97
AT5G22780.1	Thale cress	cytosol	65.36	9.87
Bra037603.1-P	Field mustard	cytosol	65.36	9.86
CDX92339	Canola	cytosol	64.71	9.83
Bra002427.1-P	Field mustard	cytosol	64.71	9.83
CDY26951	Canola	cytosol	64.71	9.82
Solyc06g074650.2.1	Tomato	plastid	62.75	9.44
AT5G22770.1	Thale cress	cytosol	62.09	9.39
VIT_06s0061g01170.t01	Wine grape	cytosol	61.44	9.26
HORVU4Hr1G089310.1	Barley	cytosol	59.48	8.57
Os01t0512200-01	Rice	plasma membrane	10.46	1.69
Os06t0167100-01	Rice	plasma membrane	7.19	1.26
Os01t0916200-02	Rice	plasma membrane	5.23	0.95
Solyc11g066760.1.1	Tomato	cytosol	0.65	0.21
Os03t0112101-00	Rice	plasma membrane	0.0	0.0
Os02t0805000-01	Rice	cytosol, plasma membrane	0.0	0.0
CDY20343	Canola	cytosol	0.0	0.0
GSMUA_Achr5P15260_001	Banana	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.30.310.10	MapMan:35.1	ProteinID:BAF10643.1	ProteinID:BAS81936.1	InterPro:Clathrin_a-adaptin_app_sub_C	InterPro:Coatomer/calthrin_app_sub_C
GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005905	GO:GO:0006810	GO:GO:0006886	GO:GO:0006897
GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030117
GO:GO:0030131	GO:GO:0035615	GO:GO:0072583	InterPro:IPR012295	EnsemblPlantsGene:Os03g0112400	EnsemblPlants:Os03t0112400-01
PFAM:PF02296	UniProt:Q0DVU5	SUPFAM:SSF55711	InterPro:TBP_dom_sf	UniParc:UPI0000E11ED4	SEG:seg

Description

Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain domain containing protein. (Os03t0112400-01)

Coordinates

chr3:+:706174..708606

Molecular Weight (calculated)

16870.5 Da

IEP (calculated)

4.843

GRAVY (calculated)

-0.001

Length

153 amino acids

Sequence
(BLAST)

001: QPITLSPEEF FPQWKALNVQ NLKVQEVVKG VKPLPLPEIA SLFMSLHLAV APGLDNNPNN LVACTTFFSE TTRAMLCLVR IETDPQDRTQ LRLTVASGDQ
101: YLTFELKEYI KEHLIDIPRV QTASPPVPVQ PQLPPAAVPA TYNDPGAMLA GLL

Best Arabidopsis Sequence Match ( AT5G22780.1 )
(BLAST)

0001: MTGMRGLSVF ISDVRNCQNK EAERLRVDKE LGNIRTCFKN EKVLTPYKKK KYVWKMLYIH MLGYDVDFGH MEAVSLISAP KYPEKQVGYI VTSCLLNENH
0101: DFLKLAINTV RNDIIGRNET FQCLALTLVG NIGGRDFAES LAPDVQKLLI SSSCRPLVRK KAALCLLRLF RKNPDAVNVD GWADRMAQLL DERDLGVLTS
0201: STSLLVALVS NNHEAYSSCL PKCVKILERL ARNQDVPQEY TYYGIPSPWL QVKAMRALQY FPTIEDPSTR KALFEVLQRI LMGTDVVKNV NKNNASHAVL
0301: FEALSLVMHL DAEKEMMSQC VALLGKFISV REPNIRYLGL ENMTRMLMVT DVQDIIKKHQ SQIITSLKDP DISIRRRALD LLYGMCDVSN AKDIVEELLQ
0401: YLSTAEFSMR EELSLKAAIL AEKFAPDLSW YVDVILQLID KAGDFVSDDI WFRVVQFVTN NEDLQPYAAS KAREYMDKIA IHETMVKVSA YILGEYGHLL
0501: ARQPGCSASE LFSILHEKLP TVSTPTIPIL LSTYAKLLMH AQPPDPELQK KVWAVFKKYE SCIDVEIQQR AVEYFELSKK GPAFMDVLAE MPKFPERQSS
0601: LIKKAENVED TADQSAIKLR AQQQPSNAIV LADPQPVNGA PPPLKVPILS GSTDPESVAR SLSHPNGTLS NIDPQTPSPD LLSDLLGPLA IEAPPGAVSY
0701: EQHGPVGAEG VPDEIDGSAI VPVEEQTNTV ELIGNIAERF HALCLKDSGV LYEDPHIQIG IKAEWRGHHG RLVLFMGNKN TSPLTSVQAL ILPPAHLRLD
0801: LSPVPDTIPP RAQVQSPLEV MNIRPSRDVA VLDFSYKFGT NVVSAKLRIP ATLNKFLQPL QLTSEEFFPQ WRAISGPPLK LQEVVRGVRP LALPEMANLF
0901: NSFHVTICPG LDPNPNNLVA STTFYSETTG AMLCLARIET DPADRTQLRL TVGSGDPTLT FELKEFIKEQ LITIPMGSRA LVPAAGPAPS PAVQPPSPAA
1001: LADDPGAMLA GLL

Arabidopsis Description

ALPHAC-ADAP-2 complex subunit alpha-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPK4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.